View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13584_low_15 (Length: 215)

Name: NF13584_low_15
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13584_low_15
NF13584_low_15
[»] chr4 (2 HSPs)
chr4 (17-128)||(18152018-18152129)
chr4 (143-174)||(18151976-18152007)
[»] chr3 (5 HSPs)
chr3 (17-128)||(28372258-28372369)
chr3 (17-128)||(28380080-28380191)
chr3 (143-174)||(28372382-28372413)
chr3 (143-174)||(28380204-28380235)
chr3 (91-127)||(8677554-8677590)
[»] chr1 (1 HSPs)
chr1 (82-118)||(18223124-18223160)


Alignment Details
Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 18152129 - 18152018
Alignment:
Q  17 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18152129 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 18152030  T
Q  117 acgtaccttgtg 128  Q
    ||||||||||||    
T  18152029 acgtaccttgtg 18152018  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 174
Target Start/End: Complemental strand, 18152007 - 18151976
Alignment:
Q  143 ttatttttttgtggaattaattatttcatctc 174  Q
    ||||||||||||||||||||||||||||||||    
T  18152007 ttatttttttgtggaattaattatttcatctc 18151976  T

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Target: chr3 (Bit Score: 112; Significance: 8e-57; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 28372258 - 28372369
Alignment:
Q  17 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28372258 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 28372357  T
Q  117 acgtaccttgtg 128  Q
    ||||||||||||    
T  28372358 acgtaccttgtg 28372369  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 28380080 - 28380191
Alignment:
Q  17 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28380080 atgaagctcagaattcatgggtgtattgaatactcccaaatcaataagggaattggtctatggtcaattcagtaacaaataaatatttatttataaccgt 28380179  T
Q  117 acgtaccttgtg 128  Q
    ||||||||||||    
T  28380180 acgtaccttgtg 28380191  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 28372382 - 28372413
Alignment:
Q  143 ttatttttttgtggaattaattatttcatctc 174  Q
    ||||||||||||||||||||||||||||||||    
T  28372382 ttatttttttgtggaattaattatttcatctc 28372413  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 174
Target Start/End: Original strand, 28380204 - 28380235
Alignment:
Q  143 ttatttttttgtggaattaattatttcatctc 174  Q
    ||||||||||||||||||||||||||||||||    
T  28380204 ttatttttttgtggaattaattatttcatctc 28380235  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 8677590 - 8677554
Alignment:
Q  91 acaaataaatatttatttataaccgtacgtaccttgt 127  Q
    ||||||||||||||||||||||  |||||||||||||    
T  8677590 acaaataaatatttatttataattgtacgtaccttgt 8677554  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 118
Target Start/End: Original strand, 18223124 - 18223160
Alignment:
Q  82 aattcagtaacaaataaatatttatttataaccgtac 118  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  18223124 aattcagtaacaaataaatacttatttataactgtac 18223160  T

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