View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13584_low_2 (Length: 562)
Name: NF13584_low_2
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 16 - 442
Target Start/End: Complemental strand, 43555177 - 43554741
Alignment:
| Q |
16 |
atcggatgactagtctcaacaatgtgtcacatttcataaataatagacgttacaatgcaa---------aaatgataaagagttatatatttgatgtctt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
43555177 |
atcggatgactagtctcaacaatgtgtcacatttcataaataatagacgttacaatgcaagcaacatgtaaatgataaagagttatatatttgatgtctt |
43555078 |
T |
|
| Q |
107 |
aaagttttgaattaaaatataattgtttgtgactcaatgtgattgttttttggactt-acttcatgatccaacaacattactacgtgactcagttcgttc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43555077 |
aaagttttgaattaaaatataattgtttgtgactcaatgtgattattttttggactttacttcatgatccaacaacattactacgtgactcagttcgttc |
43554978 |
T |
|
| Q |
206 |
ttaatttttgtagacataaaaatgttctatatgaaagaaaaagttggaggacacaatttatagaacttgttctgtgtttatttttcactgaatggagtgg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43554977 |
ttaatttttgtagacataaaaatgttctatatgaaagaaaaagttggaggacacaatttatagaacttgttctgtgtttatttttcactgaatggagtgg |
43554878 |
T |
|
| Q |
306 |
atgcatggcgttcaaataacgtttttgatttgaaatagcgtgtctatgtgctaattttaatagtgtaagtaattgacttcaacattttatgcctggtaat |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43554877 |
atgcatggcgttcaaataacgtttttgatttgaaatagcgtgtctatgtgctaattttaatagtgtaagtaattgactttaacattttatgcctggtaat |
43554778 |
T |
|
| Q |
406 |
tcaatattctaagttctaacttgtaatccacgatgcc |
442 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43554777 |
tcaatattttaagttctaacttgtaatccacgatgcc |
43554741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University