View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_low_3 (Length: 496)
Name: NF13584_low_3
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 479
Target Start/End: Original strand, 23877891 - 23878361
Alignment:
| Q |
11 |
gaagaagccattagtttttagcattttaagatcttaatattatgataggaatttagtagaagagatttataccttaaagttcatttgccaatgtgtacta |
110 |
Q |
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| T |
23877891 |
gaagaagccattagtttttaacattttaagatcttaatattatgataggaatttagtacaagagatttatactttaaagtccatttgccaatgtgcacta |
23877990 |
T |
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| Q |
111 |
gtttacatttttgaaaaagcttgagacctgtttctcctaagctgagtttgataaaccagaaaattgactatgtatagaactttaccacaattataagact |
210 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
23877991 |
gttaacatttttgaaaaagcttgagacctatttctcctaagctgagtttgataaaccagaaaattgactatgtatagaactttaccacaattataaaact |
23878090 |
T |
|
| Q |
211 |
gtagtttaatcccaagtttgctgtaaatagttnnnnnnnngccgctgcagaataatctgctatatcgttgttataactcataatgctac-----tattcc |
305 |
Q |
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|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| || ||| |
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| T |
23878091 |
gtagtttaattccaagtttgctgtaaatagtaaaaaaatt---gctgcagaataatctgctatatccttgttataacttataatgctactaaaatagtcc |
23878187 |
T |
|
| Q |
306 |
tgcaatttttgttataaatccacagaaattttttgtccaagtactctagtgttatggaatactctgcagttcagtgaccaaatcattgcagagaattatg |
405 |
Q |
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| T |
23878188 |
tgcaatttttgttataattcagcataagatttgtgtccaagtactctagtgtgatggaatactctgcagttcagtgaccaaatcattgcagagaattatg |
23878287 |
T |
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| Q |
406 |
gatgctacttgtaacattctgttgaaaacaaattatcaccaatattatagaaaactggtgataatgctctttgt |
479 |
Q |
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| T |
23878288 |
gattttacttgtaacattcttttgaaaacaaattatcaccaatattatagaaatctggtgataacgctctttgt |
23878361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 9 - 149
Target Start/End: Complemental strand, 23421244 - 23421104
Alignment:
| Q |
9 |
gagaagaagccattagtttttagcattttaagatcttaatattatgataggaatttagtagaagagatttataccttaaagttcatttgccaatgtgtac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23421244 |
gagaagaagccattagtttttagcattttaagatcttaatattatgataggaatttagtagaagagatttataccttaaagttcatttgccaatgtgtac |
23421145 |
T |
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| Q |
109 |
tagtttacatttttgaaaaagcttgagacctgtttctccta |
149 |
Q |
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| T |
23421144 |
tagtttacatttttgaaaaagcttgagacctgtttctccta |
23421104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 347 - 475
Target Start/End: Complemental strand, 23421105 - 23420977
Alignment:
| Q |
347 |
tactctagtgttatggaatactctgcagttcagtgaccaaatcattgcagagaattatggatgctacttgtaacattctgttgaaaacaaattatcacca |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23421105 |
tactctagtgttatggaatactctgcagttcagtgaccaaattattgcagagaattatggatgctacttgtaacattctgttgaaaacaaattatcacaa |
23421006 |
T |
|
| Q |
447 |
atattatagaaaactggtgataatgctct |
475 |
Q |
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| T |
23421005 |
atattatagaaaactggtgataatgctct |
23420977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 415 - 479
Target Start/End: Complemental strand, 23423025 - 23422961
Alignment:
| Q |
415 |
tgtaacattctgttgaaaacaaattatcaccaatattatagaaaactggtgataatgctctttgt |
479 |
Q |
| |
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| T |
23423025 |
tgtaacattctgttgaaaacaaattgtcaccaatatgataaaaaactggtgataatgctctttgt |
23422961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 242
Target Start/End: Original strand, 23875779 - 23875998
Alignment:
| Q |
31 |
gcattttaagatcttaatattatgataggaatttagtagaagagatttatacctt-aaagttcatttgccaatgtgtac--------tagtttacatttt |
121 |
Q |
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|||||| ||||| ||||||||||||||| ||||||||| | ||||||||||| || |||| ||||| || ||| ||| |||||||||| || |
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| T |
23875779 |
gcatttcaagattttaatattatgatagtaatttagtaaatgagatttatactttaaaagctcattggctaattgttacttgttcgttagtttacatatt |
23875878 |
T |
|
| Q |
122 |
tgaaaaagcttgaga-cctgtttctcctaagctgagtttgataaaccagaaaattgactatgtatagaac-tttaccacaattataagactgtagtttaa |
219 |
Q |
| |
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|||||||| | ||| |||||||||||||| ||| |||||||||| |||||||||| ||||||| ||||| |||| ||||| || |||| || |||| |
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| T |
23875879 |
tgaaaaagtcttagaccctgtttctcctaacctg-gtttgataaatcagaaaattgtctatgtacagaacttttatcacaaaatta--actgcagattaa |
23875975 |
T |
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| Q |
220 |
tcccaagtttgctgtaaatagtt |
242 |
Q |
| |
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||| ||||||||||||||||||| |
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| T |
23875976 |
tccgaagtttgctgtaaatagtt |
23875998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 23876000 - 23876056
Alignment:
| Q |
421 |
attctgttgaaaacaaattatcaccaatattatagaaaactggtgataatgctcttt |
477 |
Q |
| |
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||||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
23876000 |
attctgtagaaaataaattggcacaaatattatagaaaactggtgataatgctcttt |
23876056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 23423174 - 23423117
Alignment:
| Q |
31 |
gcattttaagatcttaatattatgataggaatttagtagaagagatttataccttaaa |
88 |
Q |
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|||||| ||||| ||||||||||||||| ||||||||| | ||||||||||| ||||| |
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| T |
23423174 |
gcatttcaagattttaatattatgatagtaatttagtaaatgagatttatactttaaa |
23423117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 23447730 - 23447696
Alignment:
| Q |
45 |
taatattatgataggaatttagtagaagagattta |
79 |
Q |
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| T |
23447730 |
taatattatgataggaatttaatagaagagattta |
23447696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 23447434 - 23447394
Alignment:
| Q |
353 |
agtgttatggaatactctgcagttcagtgaccaaatcattg |
393 |
Q |
| |
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|||||| | |||||||||| ||||||||||||||||||||| |
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| T |
23447434 |
agtgttttagaatactctgtagttcagtgaccaaatcattg |
23447394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 21371911 - 21371867
Alignment:
| Q |
158 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
202 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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| T |
21371911 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
21371867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 11766077 - 11766121
Alignment:
| Q |
158 |
ttgataaaccagaaaattgactatgtatagaactttaccacaatt |
202 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
11766077 |
ttgaaaaaccagaatattgactatgtatagaactttaccacaatt |
11766121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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