View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_low_6 (Length: 372)
Name: NF13584_low_6
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 361
Target Start/End: Complemental strand, 513937 - 513611
Alignment:
| Q |
30 |
ttttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggtttaatcttgtattctataatttatcgcatattgcaact |
129 |
Q |
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| T |
513937 |
ttttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggtttaatcttgtattctataatttatcacatattgcaact |
513838 |
T |
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| Q |
130 |
gatcaatattacattcttaccattttttatttgtatatcgtaggttaattgggatgaatttcaagtctcgcaaattccaagacgtgtcaacccgtggtgg |
229 |
Q |
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| T |
513837 |
gatcaa-----cattcttaccattttttatttgaatatcttaggttaattgggatgaatttcaagtctcgcaaattccaagacgtgtcaacccgtggtgg |
513743 |
T |
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| Q |
230 |
gttgagcttatttctcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaactactcaaagttctgcccaactaagtgataaaaaggaaa |
329 |
Q |
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| T |
513742 |
gttgagcttatttctcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaactactcaaagttctgcccaactaagtgataaaaaggaaa |
513643 |
T |
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| Q |
330 |
cattattgaatgatgatggttttcctgatgat |
361 |
Q |
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| T |
513642 |
cattattgaatggtgatggttttcctgttgat |
513611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 361
Target Start/End: Original strand, 563189 - 563526
Alignment:
| Q |
20 |
aaattatatattttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggtttaatcttgtattctataatttatcgca |
119 |
Q |
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| T |
563189 |
aaattatacattttttaatgacaatttaaactttatttgaacaatggtgcactctggctaatggttttgggtttaatcttgtattcaataatttatcaca |
563288 |
T |
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| Q |
120 |
tattgcaactgatcaatattacattcttaccattttttatttg--tatatcgtaggttaattgggatgaatttcaagtctcgcaaattccaagacgtgtc |
217 |
Q |
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| T |
563289 |
tattgcaaatgatcaatattgtattcttaccattttttatttgaatacatcataggttaattgggatgaatttcaaatctcgcaaatttcaagacgagtc |
563388 |
T |
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| Q |
218 |
aacccgtggtgggttgagcttatttctcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaactactcaaagttctgcccaactaagtg |
317 |
Q |
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| T |
563389 |
agcccgtggtgcgttgagct------tcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaactactcaaagttctgcccaactaagtg |
563482 |
T |
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| Q |
318 |
ataaaaaggaaacattattgaatgatgatggttttcctgatgat |
361 |
Q |
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| T |
563483 |
ataaaaaggaaacattattgaatgatgatggttttcctgttgat |
563526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 566608 - 566687
Alignment:
| Q |
164 |
atatcgtaggttaattgggatgaatttcaagtctcgcaaattccaagacgtgtcaacccgtggtgggttgagcttatttc |
243 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||| |
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| T |
566608 |
atatcataggttaactgggatgaatttcaagtctcacaaattccaagacgagtcggtatgtggtgggttgaacttatttc |
566687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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