View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_low_7 (Length: 357)
Name: NF13584_low_7
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 338
Target Start/End: Complemental strand, 34290034 - 34289711
Alignment:
| Q |
8 |
ggacatcatcactctattctaaattttatttttctagaaaaagaaagtatacaaattaaattcattaatttaattcctagttaatgaagaaggtaacatg |
107 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34290034 |
ggacatcatccccctattctaaattttatttttctagaaaaagaatgtatacaaattaaattcattaatttaattcctagttaatgaagaaggtaacatg |
34289935 |
T |
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| Q |
108 |
gtttcactgtatatcctatattttttatgatattttgttttgtctgttttaatcttcccaccatcatcctcattgaggcctcccttaacggcagaaacta |
207 |
Q |
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| T |
34289934 |
gtttcactgtatatcctatatattttatgatattt-gttttgtctgttttaatcttcccaccatcat------ttaggcctcccttaacggccaaaacta |
34289842 |
T |
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| Q |
208 |
aaccaccaagaaagtaacccgtgaaaccggaaatcaggaagcatttgggtcccacatgtttagtttaatcacgctatttagctcgccttaaaatctcttt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34289841 |
aaccaccaagaaagtaacccgtgaaaccggaaatcaggaagcatttgggtcccacatgtttagtttaatcacgctatttagctcgccttaaaatctcttt |
34289742 |
T |
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| Q |
308 |
atatacaccccttcttacttacactacttct |
338 |
Q |
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||||||||||| ||||||||||||||||||| |
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| T |
34289741 |
atatacaccccctcttacttacactacttct |
34289711 |
T |
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