View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_low_8 (Length: 333)
Name: NF13584_low_8
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 117 - 319
Target Start/End: Original strand, 28018479 - 28018677
Alignment:
| Q |
117 |
tcgtagaattcaattccataatttttctatcaaaaaatttagggaataaaaggacatagatggctttcacacatacatgatcacatattacaagggtgtg |
216 |
Q |
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| T |
28018479 |
tcgtagaagtcaattccgtaatttttctatcaaaaaatt-agggaataaaaggacatagatggctttcacacatacat---cacatattacaagggtgtg |
28018574 |
T |
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| Q |
217 |
tgacatttatgcatatataatatacattatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaa |
316 |
Q |
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| T |
28018575 |
tgacatttatgcatatataatatacattatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaa |
28018674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 139 - 276
Target Start/End: Original strand, 28075447 - 28075580
Alignment:
| Q |
139 |
ttttctatcaaaaaatttagggaataaaaggacatagatggctttcacacatacatgatcacatattacaagggtgtgtgacatttatgcatatataata |
238 |
Q |
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| T |
28075447 |
ttttctaccaaaaaatt-aggaaataaaaggacatagatggccttcacacatacata--cacatattacaagggtgtgtgacatttatgcatatataata |
28075543 |
T |
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| Q |
239 |
tacattatcaaaaccatggctctgacatattgatttga |
276 |
Q |
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| T |
28075544 |
tacattatcaaaatcatggct-tgacatatttatttga |
28075580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 155 - 319
Target Start/End: Original strand, 27922007 - 27922163
Alignment:
| Q |
155 |
ttagggaataaaaggacata--gatggctttcacacatacatgatcacatattacaagggtgtgtgacatttatgcatatataatatacattatcaaaac |
252 |
Q |
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| T |
27922007 |
ttaggaaataaaaggacatatagatggccttcacacatacata--cacatattacaagggtgtg--acttttatgcata----atatacattatcaaaac |
27922098 |
T |
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| Q |
253 |
catggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatc |
319 |
Q |
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| T |
27922099 |
catggctctgacataatgatttgatg--attgtgttatgttaggtatgaatcgccttatgggaaatc |
27922163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 139 - 319
Target Start/End: Original strand, 28036177 - 28036348
Alignment:
| Q |
139 |
ttttctatcaaaaaatttagggaataaaaggacatagatggctttcacacatacatgatcacatattacaagggtgtgtgacatttatgcatatataata |
238 |
Q |
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| T |
28036177 |
ttttctaccaaaaaatt-aggaaataaaaggacatagatggccctcacgcatacat-at-acttattacaaggctgtctgacttttatgcata----ata |
28036269 |
T |
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| Q |
239 |
tacattatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatc |
319 |
Q |
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| T |
28036270 |
tacattattaaaaccatggctctgacatattgatttgacg--attgtgttacgttaggcatgaatcgccttatgggaaatc |
28036348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 28003889 - 28003973
Alignment:
| Q |
233 |
ataatatacattatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttatgggaaatc |
319 |
Q |
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| T |
28003889 |
ataatatacataatcaaaaccatggctctgacatattgatttgac--tgttgtgttattgtaggaatgaatcgccttatgggaaatc |
28003973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 28075977 - 28076015
Alignment:
| Q |
281 |
attgtgttatgttaggtatgaatcgccttatgggaaatc |
319 |
Q |
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| T |
28075977 |
attgtgttatgttaggcatgaatcgccttatgggaaatc |
28076015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 28035565 - 28035640
Alignment:
| Q |
234 |
taatatacattatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttat |
311 |
Q |
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| T |
28035565 |
taatatatagtatcaaaaccatggctctgacatcatgatttg--gttgttgtgtcatgttaggtatcaatcaccttat |
28035640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 311
Target Start/End: Original strand, 28047467 - 28047534
Alignment:
| Q |
242 |
attatcaaaaccatggctctgacatattgatttgacgatattgtgttatgttaggtatgaatcgccttat |
311 |
Q |
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| T |
28047467 |
attatcaaaaccatgtctctgacatcatgatttg--gttgttgtgttatgttaggtatcaatcaccttat |
28047534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 94
Target Start/End: Complemental strand, 37131213 - 37131140
Alignment:
| Q |
21 |
tttgagcaaagcatgcaatgctgcacgcataatggtttgctctcaaacatcattagtaacattatcatgttttt |
94 |
Q |
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| T |
37131213 |
tttgagcaaagcatgcaatgctgcacgcataatggtttgctctcaaacatcattagtaacattatcatgttttt |
37131140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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