View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_high_12 (Length: 369)
Name: NF13585_high_12
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 17 - 356
Target Start/End: Complemental strand, 5243278 - 5242939
Alignment:
| Q |
17 |
acttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgataccc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243278 |
acttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgataccc |
5243179 |
T |
|
| Q |
117 |
ttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacatcaagaattagtatcaaattttaagtatataataatatgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
5243178 |
ttctgtccctagttgctccttccttgtctgccctcccttgctccttcctttaattaaacaccaaaaattagtatcaaattttaagtatataataatatgc |
5243079 |
T |
|
| Q |
217 |
attaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5243078 |
attaatcataaactaatgtataaccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgc |
5242979 |
T |
|
| Q |
317 |
cttctcctcaagctcttgtcggttttgttgtttagatgcc |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5242978 |
cttctcctcaagctcttgtcggttttgttgtttagatgcc |
5242939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 25522986 - 25523121
Alignment:
| Q |
17 |
acttggactcatcaatatcaataccttcctcttcagcacgttctcctcctgacttctccatagtgctcagtcctcctttacgtcccatctcctgataccc |
116 |
Q |
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||||||| |||||||| || || |||||||| ||||||||| | | || ||||| |||||||| || |||||||||||||| ||||| || |||||||| |
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| T |
25522986 |
acttggattcatcaatgtctattccttcctcagcagcacgttgttcaccagacttatccatagtactgagtcctcctttacggcccatttcttgataccc |
25523085 |
T |
|
| Q |
117 |
ttctgtccctagttgctccttccttgtctgccctcc |
152 |
Q |
| |
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|||| |||| | ||||| ||||||||||||||||| |
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|
| T |
25523086 |
ttctctccccatctgctctttccttgtctgccctcc |
25523121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 25523273 - 25523381
Alignment:
| Q |
240 |
ccttcagcaagatgttcctgagcctcaaggctcttgccaccagtgccaccaggaacaacagtctctccttgctttgccttctcctcaagctcttgtcggt |
339 |
Q |
| |
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||||||||||| |||| ||||| ||||| ||||| ||||| ||||||||||||| |||||| || || || ||||| |||||||||| |||| |||| |
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| T |
25523273 |
ccttcagcaaggtgttgttgagcttcaagactctttccacctgtgccaccaggaataacagtttcaccaagccttgccctctcctcaagttcttcacggt |
25523372 |
T |
|
| Q |
340 |
tttgttgtt |
348 |
Q |
| |
|
||||||||| |
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|
| T |
25523373 |
tttgttgtt |
25523381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 25523128 - 25523181
Alignment:
| Q |
99 |
tcccatctcctgatacccttctgtccctagttgctccttccttgtctgccctcc |
152 |
Q |
| |
|
||||||||| ||||| ||||||| ||||| |||| |||||||||||||||||| |
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|
| T |
25523128 |
tcccatctcttgatatccttctgaccctaactgctgcttccttgtctgccctcc |
25523181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 356
Target Start/End: Original strand, 2954053 - 2954115
Alignment:
| Q |
294 |
acaacagtctctccttgctttgccttctcctcaagctcttgtcggttttgttgtttagatgcc |
356 |
Q |
| |
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||||||| |||||| | ||||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
2954053 |
acaacaggctctccctcctttgccttttcctcaagctcttgtcacttttgttgttgagatgcc |
2954115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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