View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13585_high_14 (Length: 343)
Name: NF13585_high_14
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_high_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 10258235 - 10258066
Alignment:
| Q |
17 |
cttagcacaatacctaggtaaagaaatagttggtctaataagaccttgagattttccaactataacatgagttgcacaatattcatttgcttctctaacc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10258235 |
cttagcacaatacctaggtaaagaaatagttggtctaataagaccttgagattttccaactataacatgagttgcacaatattcatttgcttctctaacc |
10258136 |
T |
|
| Q |
117 |
aaaattctcctcactgacgaaccccggcaaatttttagcttcagatccacctacatcattttccaaattt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10258135 |
aaaattctcctcactgacgaaccccggcaaatttttagcttcagatccacctacatcattttccaaattt |
10258066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 10258041 - 10257968
Alignment:
| Q |
212 |
tggcacttgatacatacatatttctttaaattaacttttgtctattattaaccctctgattctcagaaagtaaagtc |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
10258041 |
tggcacttgatacatacatatttctttaaattaacttttgtct---attaaccttctgattctcagaaagtaaagtc |
10257968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 171
Target Start/End: Complemental strand, 40376649 - 40376548
Alignment:
| Q |
70 |
ttccaactataacatgagttgcacaatattcatttgcttctctaaccaaaattctcctcactgacgaaccccggcaaatttttagcttcagatccaccta |
169 |
Q |
| |
|
||||||| |||||||||| |||| |||| |||||||||||| |||||||||||| |||| || || || |||||||||||||| || ||||||||||| |
|
|
| T |
40376649 |
ttccaacaataacatgagatgcagaataagcatttgcttctcgtaccaaaattctcttcaccgatgatccacggcaaatttttagtttaagatccaccta |
40376550 |
T |
|
| Q |
170 |
ca |
171 |
Q |
| |
|
|| |
|
|
| T |
40376549 |
ca |
40376548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University