View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13585_high_25 (Length: 206)
Name: NF13585_high_25
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 44635759 - 44635964
Alignment:
| Q |
1 |
caaattagcagtttaccctcacagaaagtcatatgacatactgcagagacaaaaagcattaaaaaatcaccgcactctgatacagatcagatacaaagta |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
44635759 |
caaattagcagtttaccctcacacaaagtcatatgacatactgcagagacaaaaagcattaaaaaatcaccgcactcttatacagatcagataaaaagta |
44635858 |
T |
|
| Q |
101 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagca-caggtccgtgtggaatgaacacagc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
44635859 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcaccaggtccgtgtggaatgaacacagc |
44635958 |
T |
|
| Q |
200 |
agaaga |
205 |
Q |
| |
|
|||||| |
|
|
| T |
44635959 |
agaaga |
44635964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 206
Target Start/End: Complemental strand, 44633047 - 44632877
Alignment:
| Q |
37 |
catactgcagagacaaaaagcattaaaaaatcaccgcactctgatacagatcagatacaaagtaggaggaatagaagctactcatgagaaccctggagaa |
136 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||| ||||| |||||||| |||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44633047 |
catactgcagagacataaaacattaaaaaatcacaacacttccatacaaatcagatatgaagtgggaggaatagaagctactgatgagaaccctggagaa |
44632948 |
T |
|
| Q |
137 |
gtccgtcacgaatttggcttactacatcgcgaacagc-acaggtccgtgtggaatgaacacagcagaagac |
206 |
Q |
| |
|
|||| || ||||||||||| | |||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
44632947 |
gtccatcgcgaatttggctagcaacatcgcgaacagcgccaggtccatgtggaatgaacacagcagaagac |
44632877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 44625694 - 44625588
Alignment:
| Q |
101 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagca-caggtccgtgtggaatgaacacagc |
199 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
44625694 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44625595 |
T |
|
| Q |
200 |
agaagac |
206 |
Q |
| |
|
||||||| |
|
|
| T |
44625594 |
agaagac |
44625588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 101 - 206
Target Start/End: Complemental strand, 44693380 - 44693274
Alignment:
| Q |
101 |
ggaggaatagaagctactcatgagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagca-caggtccgtgtggaatgaacacagc |
199 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||| ||||||||| ||||||| ||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
44693380 |
ggaggagtagaagctactgatgagaaccctggagaagtccatcacaaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagc |
44693281 |
T |
|
| Q |
200 |
agaagac |
206 |
Q |
| |
|
||||||| |
|
|
| T |
44693280 |
agaagac |
44693274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 44654828 - 44654743
Alignment:
| Q |
122 |
gagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagca-caggtccgtgtggaatgaacacagcagaagac |
206 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
44654828 |
gagaaccctggagaagtccatcacgaatttggctagctacatcacgaacagcaccaggtccatgtggaatgaacacagcagaagac |
44654743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 44683627 - 44683542
Alignment:
| Q |
122 |
gagaaccctggagaagtccgtcacgaatttggcttactacatcgcgaacagcac-aggtccgtgtggaatgaacacagcagaagac |
206 |
Q |
| |
|
||||||||||||||||||| ||||||||||| || ||||||| |||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
44683627 |
gagaaccctggagaagtccatcacgaatttgactagctacatcacgaacagcgccaggtccgtgtggaatgaacacagcagaagac |
44683542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University