View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_high_4 (Length: 552)
Name: NF13585_high_4
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Original strand, 39042019 - 39042543
Alignment:
| Q |
12 |
catcatcaaggcgatgtctcaacaagaatgagacatattagcaactaagtggccattttagcatagctcaagtagccaaacatatgccaaattaaaaaag |
111 |
Q |
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| T |
39042019 |
catcatcaaggcgatgtctcaacaggaatgagacatattagcaactaagtggccattttaccatagctcaagtagccaaacatatgccaaattaaaaaag |
39042118 |
T |
|
| Q |
112 |
gcattaaattgaggtgcccactggccagtgttcaacttccatgtggactgcaacatgtaatgtgctttttacattacattcacatggaagataacctttc |
211 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39042119 |
gcattaaattaaggtggccactggccagtgttcaacttccatgtggactgcaacatgtaatgtgctttttacattacattcacatggaagataacctttc |
39042218 |
T |
|
| Q |
212 |
aatttctag-ttttctatcataccttctttatcatgcaagagacttaaagaggtgttttgtccacgcaaaccactctagaaattggnnnnnnntgtcttc |
310 |
Q |
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| T |
39042219 |
aatttctagtttttctatcataccttctttatcatgcaagagacttaaagaggtgttttgtccacgcaaaccactctagaaattggaaaaaaatgtcttc |
39042318 |
T |
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| Q |
311 |
nnnnnnnnatatggaatctaagcataccatagtggttctccccatatcattttttattggtttcatttggccaaaagtgttgcacaagtacaccaacttt |
410 |
Q |
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| T |
39042319 |
-tttttttatatggaatctaagcataccatagtggttctccccatatcattttttattggtttcatttggccaaaagtgttgcacaagtacaccaacttt |
39042417 |
T |
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| Q |
411 |
agtacatcaggtcacgcttatgtaaacaaccatttcttaatgcaagaa--atatcatatatcttccaatttaaaattgccccttacattgagtgggaccc |
508 |
Q |
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| T |
39042418 |
actacatcaggttacgcttatgtaaacaaccatttcttaatgcaagaaatatatcatatatcttccaatttaaaattgccccatacattgagtgggaccc |
39042517 |
T |
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| Q |
509 |
tttctaagtatgtggagtgactctat |
534 |
Q |
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| T |
39042518 |
tttctaagtatgtggagtgactctat |
39042543 |
T |
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