View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_high_9 (Length: 435)
Name: NF13585_high_9
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 33811125 - 33811537
Alignment:
| Q |
17 |
atcatctgcattccatacacttgaaaacaagtacattggtttctaatttgggaagaaattgtttggtttgtcattgttcttgaacatcctta----ttgg |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
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| T |
33811125 |
atcatctgcattccatacacttgaaaacaagtacattggtttctaatttgggaagatattgtttggtttgtcattgttcttgaacacccttaattattgg |
33811224 |
T |
|
| Q |
113 |
aactctatccacaaaaactttgatgtcattttttgacttgggttataagattaagaacaccaataagagtaatatacgattgaacttacactatctggtg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811225 |
aactctatccacaaaaactttgatgtcattttttgacttgggttataagattaagaacaccaataagagtaatatacgattgaacttacactatctggtg |
33811324 |
T |
|
| Q |
213 |
attattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtacac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811325 |
attattccagagaatagaataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtacac |
33811424 |
T |
|
| Q |
313 |
atttgtttcaatcaaatatgattgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctgc |
412 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811425 |
atttgtttgaatcaaatatgcttgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctgc |
33811524 |
T |
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| Q |
413 |
aacaatcccctat |
425 |
Q |
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| T |
33811525 |
aacaatcccctat |
33811537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 131 - 425
Target Start/End: Complemental strand, 47495497 - 47495207
Alignment:
| Q |
131 |
tttgatgtcattttttgacttgggttataagattaagaacaccaataagagtaatatacgattgaacttacactatctggtgattattccagagaataga |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47495497 |
tttgatgtcattttttgacttgggttataagattaagaacaccaataagagtaatatatgattgaacttacactatttggtgattattccagagaataga |
47495398 |
T |
|
| Q |
231 |
ataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtccaattcattcttgtacacatttgtttcaatcaaata |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || |
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| T |
47495397 |
ataggtgtgatagtcctcagtgggatcaaaccaaagcatatgtctcatctcacgattaccggtcc----cattcttgtacacatttgtttgaatcaagta |
47495302 |
T |
|
| Q |
331 |
tgattgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctgcaacaatcccctat |
425 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47495301 |
tggttgtcctgttctgtttcccaaaaactcaaaatcaagctcatctctttctggccctgcaccattttctgtacacatctgcaacaatcccctat |
47495207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 47495952 - 47495840
Alignment:
| Q |
17 |
atcatctgcattccatacacttgaaaacaagtacattggtttctaatttgggaagaaattgtttggtttgtcattgttcttgaacatccttattggaact |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
47495952 |
atcatctgcattccatacacttgaaaacaagtacattggtttctcatttgggaagaaattgtttggtttgtcattgttcttgaacacccttattggaact |
47495853 |
T |
|
| Q |
117 |
ctatccacaaaaa |
129 |
Q |
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||||||||||||| |
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| T |
47495852 |
ctatccacaaaaa |
47495840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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