View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_11 (Length: 385)
Name: NF13585_low_11
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 26484271 - 26483898
Alignment:
| Q |
1 |
cagattctacctcctattaacggtaattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatcaatcatgatcgttg |
100 |
Q |
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| T |
26484271 |
cagattctacctcctattaacggttattttagcattaaaccatattaaaaaattgttatatgtaaaatgtttttacactatcaatcaatcatgatcgttg |
26484172 |
T |
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| Q |
101 |
gaataacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaat |
200 |
Q |
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| T |
26484171 |
gaataacttttataatcatacatattatgagtgtattgataatcacattttgttaaccaaataatgacaaattaagagaaaaatagtgaaagataagaat |
26484072 |
T |
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| Q |
201 |
tgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaac |
300 |
Q |
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| T |
26484071 |
tgtgtactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcaggcttatgattttgaatctctgaac |
26483972 |
T |
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| Q |
301 |
cttttgaattttccttggaaccaacatcgtcacaattttctctatttttcaactttgtattcttatttcccttt |
374 |
Q |
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| T |
26483971 |
cttttgaattttccttggaaccaacatcatcacaattttctctatttttcaactttgtattcttatttcccttt |
26483898 |
T |
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Back To:
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Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 205 - 276
Target Start/End: Complemental strand, 54615899 - 54615828
Alignment:
| Q |
205 |
tactcactctttcagctaagctatgactatcagtagcttgaccacgacgtgctcgaacatgaatgtaatcag |
276 |
Q |
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| T |
54615899 |
tacttactctttcagctaagctatgactgtcggtggcttggccacgacgtgctcgaacatgaatgtaatcag |
54615828 |
T |
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