View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_12 (Length: 374)
Name: NF13585_low_12
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Complemental strand, 39429251 - 39428906
Alignment:
| Q |
18 |
attataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgattttattctctt |
117 |
Q |
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| T |
39429251 |
attataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgattttattctctt |
39429152 |
T |
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| Q |
118 |
tggttaccgtctctacttcttcctttcttgctgattgttatcgtgccggcgaccccgattccggcaagagaaactatacttacatggacgctgttcgatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
39429151 |
tggttaccgtctctacttcttcctttcttgctgattgttatcgtgccggcgacccccattccggcaagagaaactatacttacatggacgctgttcgctc |
39429052 |
T |
|
| Q |
218 |
tattcttggtaaaactgcttctcctttattatatttgacaaacagattatgttccttcgataacaaaaatattactaagtgtcaaaggtcttggagataa |
317 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39429051 |
tattcttggtaacactgcttctcctttattatatttgacaaacagattatgttccttcgataacaaaaatattactaagtgtcaaaggtcttggagataa |
39428952 |
T |
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| Q |
318 |
catggactgaaatatt-ttttgcaggtggagctaaggttacatttt |
362 |
Q |
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| T |
39428951 |
catggactgaaatatttttttgcaggtggagctaaggttacatttt |
39428906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 229
Target Start/End: Original strand, 6249360 - 6249553
Alignment:
| Q |
21 |
ataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgattttattctctttgg |
120 |
Q |
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| T |
6249360 |
ataacagctgtgataggatcaggggtgttgtctttagcttgggccatagctcagctaggttgggttgctggtcctgctgtcatgattttattctctttgg |
6249459 |
T |
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| Q |
121 |
ttaccgtctctacttcttcctttcttgctgattgttatcgtgccggcgaccccgattccggcaagagaaactatacttacatggacgctgttcgatctat |
220 |
Q |
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|||| | || ||||| |||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||||||||| || || |
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| T |
6249460 |
ttacagcctatactt---------------attgttatcgcaccggtgaccctgattccggcaagagaaaatatacttacatggacgctgttcgctccat |
6249544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Original strand, 6249672 - 6249721
Alignment:
| Q |
313 |
gataacatggactgaaatattttttgcaggtggagctaaggttacatttt |
362 |
Q |
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|||||| ||||||||||| | ||||||||||||||| |||||||| |||| |
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| T |
6249672 |
gataacgtggactgaaatgtattttgcaggtggagcaaaggttacgtttt |
6249721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 40203615 - 40203689
Alignment:
| Q |
21 |
ataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcct |
95 |
Q |
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| T |
40203615 |
ataacagctgtgatagggtctggagtgctgtctctagcttgggctattgctcaacttggatggattgctggtcct |
40203689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 40199452 - 40199538
Alignment:
| Q |
21 |
ataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgatt |
107 |
Q |
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||||||||||| |||| || || ||| ||||| || ||||||| |||||||| || || ||||||||||||||| |||||||||| |
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| T |
40199452 |
ataacagctgtggtagggtctggagtgctgtctctatcttgggctattgctcaacttggatggattgctggtcctattgtcatgatt |
40199538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 40207771 - 40207857
Alignment:
| Q |
21 |
ataacagctgttataggatcaggggtgttgtctttagcttgggccattgctcagctaggttggattgctggtcctgctgtcatgatt |
107 |
Q |
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||||||||||| |||| || || || ||||| |||||||||| |||||||| || || ||||||||||||||| |||||||||| |
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| T |
40207771 |
ataacagctgtggtagggtctggagttctgtctctagcttgggctattgctcaactcggatggattgctggtcctattgtcatgatt |
40207857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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