View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_16 (Length: 298)
Name: NF13585_low_16
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_16 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 289
Target Start/End: Original strand, 18152313 - 18152595
Alignment:
| Q |
7 |
tcaaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
106 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152313 |
tcaaataccatacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
18152412 |
T |
|
| Q |
107 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152413 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
18152512 |
T |
|
| Q |
207 |
tctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
289 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152513 |
tctttttcaggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
18152595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 1786425 - 1786139
Alignment:
| Q |
8 |
caaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcacaa |
107 |
Q |
| |
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||||| |||||||||||||||| ||||||| | ||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
1786425 |
caaatgccacacatgggttactagacatgcaaattttacataccccatttgatatctacgtatccgagaatcaacagattctactccgcattgttcacaa |
1786326 |
T |
|
| Q |
108 |
aatttgggttggtctttttt--atctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcc |
205 |
Q |
| |
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||||| || | ||||||||| ||||| ||||||||||||| | | ||||||||| |||||| |||||||| ||| |||||||| ||||||||||||||| |
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| T |
1786325 |
aattttggctcgtcttttttttatctctgattactcgataactcctacaagcacacatcccattttttatatgccaaaaaattctttcacaaaataatcc |
1786226 |
T |
|
| Q |
206 |
atctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggattttctt |
292 |
Q |
| |
|
||||||||| | ||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||||| ||||| ||||||| |
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| T |
1786225 |
atctttttcagacttattggtattgtaatgaaaagtaaagggttttgttacctccccaacaatttctccattatgtaggtttttctt |
1786139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 28372074 - 28371792
Alignment:
| Q |
7 |
tcaaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28372074 |
tcaaataccatacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
28371975 |
T |
|
| Q |
107 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28371974 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
28371875 |
T |
|
| Q |
207 |
tctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28371874 |
tctttttcaggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
28371792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 28379896 - 28379614
Alignment:
| Q |
7 |
tcaaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
106 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379896 |
tcaaataccatacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
28379797 |
T |
|
| Q |
107 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379796 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
28379697 |
T |
|
| Q |
207 |
tctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
289 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28379696 |
tctttttcaggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
28379614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 3578206 - 3578063
Alignment:
| Q |
7 |
tcaaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
106 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||| |||||||||| || || ||| ||||||| | |||||| |||||||||||||| |||||||||||| |
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| T |
3578206 |
tcaaataccacacatggattactagacatgctagatttatatacctcacttaatatctacgtatctgagaataaacaaattctactctgcattgttcaca |
3578107 |
T |
|
| Q |
107 |
aaatttgggttggtcttttttatctccgattactcgataatttc |
150 |
Q |
| |
|
|||||| |||||||||||||||| || |||||||| |||||||| |
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|
| T |
3578106 |
aaattttggttggtcttttttatttctgattactcaataatttc |
3578063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 21288296 - 21288374
Alignment:
| Q |
136 |
ttactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatctttttc |
214 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21288296 |
ttactcgataatttccacaaacacaaatcccactttttataggcccaaaaattcgttcacaaaataatccatttttttc |
21288374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 289
Target Start/End: Original strand, 6532112 - 6532231
Alignment:
| Q |
170 |
ttttataggcccaaaaattcgttcacaaaataatccatctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatt |
269 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6532112 |
ttttatatccccacaaattctttcacaaaataatccatctttttcaggcatatttgttttgtaatgaagagtatagggttttgttaccttgccaacaatt |
6532211 |
T |
|
| Q |
270 |
tctccattaggtaggatttt |
289 |
Q |
| |
|
|| ||||| |||| ||||| |
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|
| T |
6532212 |
tcaacattaagtagtatttt |
6532231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 223406 - 223124
Alignment:
| Q |
7 |
tcaaataccacacatgggttactggacatgctagttttatataccccatttgatacctacgtacccgagaatcaacaaattctactccgcattgttcaca |
106 |
Q |
| |
|
|||||||||||||||| || || |||||||| ||||| || || ||||||||||| || |||| ||||||||| ||||||||||| ||||||| || || |
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|
| T |
223406 |
tcaaataccacacatgagtcacgggacatgcgagtttgatgtatcccatttgatatcttcgtatccgagaatccacaaattctaccccgcatttttggca |
223307 |
T |
|
| Q |
107 |
aaatttgggttggtcttttttatctccgattactcgataatttccacaagcacaaatcccactttttataggcccaaaaattcgttcacaaaataatcca |
206 |
Q |
| |
|
|||| | | || |||| | ||||| | ||||| |||| |||||| | |||||||| |||||||| || ||||| |||| ||| ||||| |||||| |
|
|
| T |
223306 |
aaatctttcgtcttcgttttcagctccgctcgctcgagaattgccacaaccgcaaatcccgctttttatgggtccaaagattctttcgcaaaacaatcca |
223207 |
T |
|
| Q |
207 |
tctttttcgggcttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggatttt |
289 |
Q |
| |
|
|||||||| || |||| |||||| ||||||| |||| |||| |||| || || ||||| |||||||||||||||| |||| |
|
|
| T |
223206 |
tctttttctggtttatcggttttataatgaaaagtagagggccttgtgacttcgccaacggcttctccattaggtaggttttt |
223124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 218 - 288
Target Start/End: Original strand, 23936815 - 23936885
Alignment:
| Q |
218 |
cttattggttttgtaatgaagagtatagggttttgttacctctccaacaatttctccattaggtaggattt |
288 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||| ||||||| |
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|
| T |
23936815 |
cttattggttttgtaacgaagagtataaggttttgtcacctgtccaacaatttctccattagggaggattt |
23936885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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