View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_17 (Length: 272)
Name: NF13585_low_17
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_17 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 164 - 272
Target Start/End: Complemental strand, 1048193 - 1048085
Alignment:
| Q |
164 |
tactcacaaataaggtcatttcatgctagttggcaagagtaaagataagacagaatataaccataaataaccaatcttaacagtagcctatatatataac |
263 |
Q |
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| T |
1048193 |
tactcacaaataaggtcatttcatgctagttggcaagagtaaagataaaacagaatataaccaaaaataaccaatattaacagtagactatatatataac |
1048094 |
T |
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| Q |
264 |
aaataacaa |
272 |
Q |
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| T |
1048093 |
aaataacaa |
1048085 |
T |
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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 1048277 - 1048223
Alignment:
| Q |
76 |
ctatggaggaaggaagaattaaacaataaaaagtgatagaagaagcaagttcttccctc |
134 |
Q |
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| T |
1048277 |
ctatggaggaaggaagaa----acaataaaaagtgatagaagaagcaagttcttccctc |
1048223 |
T |
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