View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_18 (Length: 271)
Name: NF13585_low_18
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 4743362 - 4743142
Alignment:
| Q |
11 |
acatcatcattcaagttgaagggcactgcagctgatctcatcttagaggaagaaagttggttagaaacttatagtccagtatgtgaagcaataaactctt |
110 |
Q |
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| T |
4743362 |
acatcatcattcaagttgaagggcactgcagctgatctcatcttagaggaagaaagttgtttagaaactttgagtccagtatgtgaagcaagaaactcat |
4743263 |
T |
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| Q |
111 |
cactagttaaatcagaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctctttgaatatctt |
210 |
Q |
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| T |
4743262 |
cactagttaaatcagaatattgatttaggcccagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattatttttgaatatcct |
4743163 |
T |
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| Q |
211 |
ttttcgtttgtctaactcaga |
231 |
Q |
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| T |
4743162 |
tttccgtttctctaactcaga |
4743142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 4735432 - 4735191
Alignment:
| Q |
9 |
ggacatcatcattcaagttgaagggcactgcagctgatctcatcttagaggaagaaagttggttagaaacttatagtccagtatgtgaagcaataaactc |
108 |
Q |
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| T |
4735432 |
ggacatcatcattcaggttgaagggtattgcaactgatctcatcttggagtcagaaagttggtctgaaactttgaatccagtatgtgaagcaataaactc |
4735333 |
T |
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| Q |
109 |
ttcactagttaaatcagaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctctttgaatatc |
208 |
Q |
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| T |
4735332 |
ttcactggttaaatcagaatatcgatttaggccaagtttgtaactcttgttaccaacattgttgaaattctcgatatattccaaattctccttgaatatt |
4735233 |
T |
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| Q |
209 |
ttttttcgtttgtctaactcagaattgtttgtgtatgtgcgt |
250 |
Q |
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| T |
4735232 |
tttttgcgtttctccatctcagaactatttgtgtatgtgcgt |
4735191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 199
Target Start/End: Original strand, 28284810 - 28284906
Alignment:
| Q |
103 |
aaactcttcactagttaaatcagaatattgatttaggccaagcttgtaactcttgttaccagcattgttgaaattctctatgtattctaaattctct |
199 |
Q |
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| T |
28284810 |
aaactcttcatttgttaaatcagagaattgattcagacccaacttataagtctgttttccagcacggttaaaattctctatgtattctaaattctct |
28284906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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