View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_2 (Length: 906)
Name: NF13585_low_2
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 789; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 789; E-Value: 0
Query Start/End: Original strand, 18 - 887
Target Start/End: Complemental strand, 21244536 - 21243668
Alignment:
| Q |
18 |
cagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaataattttgttgtccatcacggtg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244536 |
cagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattaatagagaagtatcaattgaaaaataattttgttgtccatcacggtg |
21244437 |
T |
|
| Q |
118 |
tatttatatggtgtgcgatttcattttttattagctattccgctctctctgtgtcaaatcaatagttataagcgatgatagttttatacctcaaactaaa |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21244436 |
tatttatatggtgtgcgatttcattttttattagttgttccgctctctctgtgtcaaatcaatagttataagtgatgatagttttatacctcaaactaaa |
21244337 |
T |
|
| Q |
218 |
actatcatgcaagnnnnnnnacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacctggtt |
317 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21244336 |
actatcatgcaagtttttttacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagaagatcttcaagttctgctggtgcaacctggtt |
21244237 |
T |
|
| Q |
318 |
aatttcaaaaacacaaatattacatgatgtgaaattccatgcataattaatcattttcacacatagtaaaagggttataaacaaataatcactcaaaaag |
417 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244236 |
aatttcaaaaacacaaatattacatgatgtgaaattccctgcataattaatcattttaacacatagtaaaagggttataaacaaataatcactcaaaaag |
21244137 |
T |
|
| Q |
418 |
aggagcttaagaaagattaatgagtaagattactacaattcacacattaagaataataattaggggcatggagcatttgtttaatgcaaccaataccata |
517 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
21244136 |
aggagcttaagaaagattaatgagtaaaattactacaattgacacattaagaataataatttgggtcatggagcatttgtttaatgcaaccaataccata |
21244037 |
T |
|
| Q |
518 |
tcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaataatgtatagacgaaaatgttactttagttactgatatcat |
617 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244036 |
tcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcagataatgtatagacgaaaatgttactttagttactgatatcat |
21243937 |
T |
|
| Q |
618 |
tttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccgg |
717 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243936 |
tttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccgg |
21243837 |
T |
|
| Q |
718 |
tatgtacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaat |
817 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243836 |
tatgcacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaat |
21243737 |
T |
|
| Q |
818 |
gtacataatacaaataatatgatggcattatgttggaaaaggaccaagaatacatgttgcacgacatgac |
887 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21243736 |
gtacataatacaaataatatgatggcattatgttgg-aaaggaccaagaatacatgttgcacgacatgac |
21243668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 385 - 834
Target Start/End: Complemental strand, 21259487 - 21259030
Alignment:
| Q |
385 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaagattaatga-------gtaagattactacaattcacacattaagaataataat |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||| ||||||||||||||||||| |
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| T |
21259487 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaatattaattattaataagtaaaattactacaattgacacattaagaataataat |
21259388 |
T |
|
| Q |
478 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaat |
577 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||| || |
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| T |
21259387 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagtaaacataactgtgacaaggatttgggtaagatttcagat |
21259288 |
T |
|
| Q |
578 |
aatgtatag---acgaaaatgttactttagttactgatatcattttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaaca |
674 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| |
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| T |
21259287 |
aatgaataataaacgaaaatgttactttagttact-atatcattttagattacataccttataacctttgtacttgatcagttccttcatacgatcaaca |
21259189 |
T |
|
| Q |
675 |
acataaagtcggccaatctcatcaaaatatccaagatctccggtatgtacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaat |
774 |
Q |
| |
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||||||||| | || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |||| |
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| T |
21259188 |
acataaagttgtccgatctcatcaaaatatccaagatctcctgtatgtacgcacccctcgttacctaaagtttgttttgtggcctctagattgttataat |
21259089 |
T |
|
| Q |
775 |
aacctgaaatatttgtataggaaaagtttcatatgggaaaaatgtacataatacaaataa |
834 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| | | || |||||||||||||||| |
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| T |
21259088 |
aacctgaatta-ttgtataggaaaagtttcatatggaagatatttacataatacaaataa |
21259030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 726 - 817
Target Start/End: Complemental strand, 21254887 - 21254797
Alignment:
| Q |
726 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaat |
817 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
21254887 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatattggaaaaat |
21254797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 726 - 808
Target Start/End: Complemental strand, 21250746 - 21250665
Alignment:
| Q |
726 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatat |
808 |
Q |
| |
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| T |
21250746 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatat |
21250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 21259737 - 21259619
Alignment:
| Q |
18 |
cagcctcatcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaa-----taattttgttgtccatca |
112 |
Q |
| |
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|||||||||||||||||||||||| | |||||||||||||||| || | ||||| |||| || |||||||||||||| | | ||||||||||| || |
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| T |
21259737 |
cagcctcatcatcaggaaatctatagcaataagtaactcaaatgtgtattattaatagaaaaatatcaattgaaaaacagttttaatttgttgtccacca |
21259638 |
T |
|
| Q |
113 |
cggtgtatttatatggtgt |
131 |
Q |
| |
|
||| |||||||||||||| |
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| T |
21259637 |
tggtatatttatatggtgt |
21259619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 249 - 324
Target Start/End: Complemental strand, 21259573 - 21259498
Alignment:
| Q |
249 |
aacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacctggttaatttca |
324 |
Q |
| |
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||||||| ||||||||||||| || |||||||| || |||||||||||| ||||||| ||||||| |||| ||||| |
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| T |
21259573 |
aacgacaacatcttgtatttctggatgagaaacaagaagatcttcaagtgctgctggcgcaacctagttattttca |
21259498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 623 - 783
Target Start/End: Original strand, 40806761 - 40806921
Alignment:
| Q |
623 |
attacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccggtatgt |
722 |
Q |
| |
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|||||||||||| | ||||| || |||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||| |||||| |
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| T |
40806761 |
attacatacctggaaccctttatacttgatcagttctttgatacggtcaacgacaaaaagatttccatcctcatcaaaatatccaagatctcccgtatgt |
40806860 |
T |
|
| Q |
723 |
acccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaa |
783 |
Q |
| |
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|||||||| | ||||||| ||| | ||| ||||| | ||||||||||||||||||||| |
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| T |
40806861 |
acccacccttttttatctatagtcaatcttgaggcctgtggattgttgtaataacctgaaa |
40806921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 253 - 313
Target Start/End: Original strand, 40806385 - 40806445
Alignment:
| Q |
253 |
acagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacct |
313 |
Q |
| |
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|||||||| |||||||||| |||||||| || ||| |||||||||||||||||||||||| |
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| T |
40806385 |
acagcatcaagtatttcaggatgagaaacaagaagaccttcaagttctgctggtgcaacct |
40806445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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