View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_20 (Length: 256)
Name: NF13585_low_20
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 24786437 - 24786200
Alignment:
| Q |
12 |
gaaatgaacaacagtagaagaatccaaagcacagggaaaatcaagcccagcaagattttacagagtagaattcactcaccagttacttcattatccaatg |
111 |
Q |
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| T |
24786437 |
gaaaagaacaacagtagaagaatccaaagcacagggataatcaagcccggcaagattttacagagtagaattcactcaccagttacttcattatccaatg |
24786338 |
T |
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| Q |
112 |
atgcaagagaaaatttgcctttgtcagtgttatcaccaacaggatcaagaccgtcggattcaaatgcctcttgggaggataggacatcatcattattgac |
211 |
Q |
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| T |
24786337 |
atgcaagagaaaatttgcctttgtcagtgttatcaccaacaggatcaagaccgtcggattcaaatgcctcttgggaggataggacatcatcattattgac |
24786238 |
T |
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| Q |
212 |
caaagtttctgttgcaaatctatgtctgtatctaactg |
249 |
Q |
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| T |
24786237 |
caaagcttctgttgaaaccctatgtctgtatctaactg |
24786200 |
T |
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Back To:
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Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 82 - 249
Target Start/End: Original strand, 24302910 - 24303077
Alignment:
| Q |
82 |
ttcactcaccagttacttcattatccaatgatgcaagagaaaatttgcctttgtcagtgttatcaccaacaggatcaagaccgtcggattcaaatgcctc |
181 |
Q |
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| T |
24302910 |
ttcactcaccagctacttcattatccaatgatgtaggtgaagcatcgcctgtgtcagtgttatcaccaacgagatcaagattgtcagattcaaacacctc |
24303009 |
T |
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| Q |
182 |
ttgggaggataggacatcatcattattgaccaaagtttctgttgcaaatctatgtctgtatctaactg |
249 |
Q |
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| T |
24303010 |
ttgggaggataggacatcaacattattgtccaaagtttcttgggaaaacctatgtctgtatttaactg |
24303077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 11358806 - 11358850
Alignment:
| Q |
73 |
agagtagaattcactcaccagttacttcattatccaatgatgcaa |
117 |
Q |
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| T |
11358806 |
agagtagcattcactcgccagttacttcattatccaatgatgcaa |
11358850 |
T |
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