View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13585_low_21 (Length: 243)

Name: NF13585_low_21
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13585_low_21
NF13585_low_21
[»] chr1 (14 HSPs)
chr1 (9-243)||(27777359-27777593)
chr1 (9-243)||(27782368-27782602)
chr1 (27-172)||(27780947-27781092)
chr1 (47-131)||(38227213-38227300)
chr1 (41-112)||(38227135-38227206)
chr1 (42-112)||(38226992-38227062)
chr1 (41-112)||(38227063-38227134)
chr1 (27-80)||(27781156-27781209)
chr1 (27-78)||(27781080-27781131)
chr1 (41-109)||(17663550-17663618)
chr1 (27-80)||(27781195-27781248)
chr1 (41-104)||(17700361-17700424)
chr1 (27-77)||(27781120-27781170)
chr1 (49-86)||(21079010-21079047)
[»] chr7 (1 HSPs)
chr7 (42-168)||(440929-441055)
[»] chr4 (4 HSPs)
chr4 (41-128)||(35250178-35250265)
chr4 (41-168)||(51220034-51220161)
chr4 (47-131)||(51220827-51220911)
chr4 (99-131)||(51220427-51220459)
[»] chr8 (1 HSPs)
chr8 (99-168)||(44989768-44989837)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 243
Target Start/End: Complemental strand, 27777593 - 27777359
Alignment:
Q  9 acatcatcacatggaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 108  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777593 acatcatcacttgtaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27777494  T
Q  109 cattcatcttcttctcttcaatactttgattagaggcagcaggttccttgcaatcttgtggtgtctcgaaaccgccgtgagctatatgcaatagagtttc 208  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27777493 cattcatcttcttctcttcaatactttgattagaggcagtaggttcctttcaatcttgtggtgtctcgaaaccgccgtgagatatatgcaatagagtttc 27777394  T
Q  209 agctgcaatagcatcatcatcattattcatgtaac 243  Q
    |||||||||||||||||||||||||||||||||||    
T  27777393 agctgcaatagcatcatcatcattattcatgtaac 27777359  T

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Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 27782368 - 27782602
Alignment:
Q  9 acatcatcacatggaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 108  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27782368 acatcatcacttgaaagctcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27782467  T
Q  109 cattcatcttcttctcttcaatactttgattagaggcagcaggttccttgcaatcttgtggtgtctcgaaaccgccgtgagctatatgcaatagagtttc 208  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27782468 cattcatcttcttctcatcaatactttgattagaggcagaaggttccttacaatcttgtggtgtctcgaaaccgccgtgagatatatgcaatagagtttc 27782567  T
Q  209 agctgcaatagcatcatcatcattattcatgtaac 243  Q
    |||||||||||||||||||||||||||||||||||    
T  27782568 agctgcaatagcatcatcatcattattcatgtaac 27782602  T

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Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 27781092 - 27780947
Alignment:
Q  27 tcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctctt 126  Q
    ||||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||    
T  27781092 tcaaaattcttcatatcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttctctt 27780993  T
Q  127 caatactttgattagaggcagcaggttccttgcaatcttgtggtgt 172  Q
    |||||||||||||||||||||||||||||||||||| |||||||||    
T  27780992 caatactttgattagaggcagcaggttccttgcaatattgtggtgt 27780947  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 38227213 - 38227300
Alignment:
Q  47 acttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcat---tcatcttcttctcttcaata 131  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||   || |||||||||||||||||    
T  38227213 acttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttcttctcttcaata 38227300  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 38227135 - 38227206
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcatt 112  Q
    ||||| ||||||||||||||||||||||| |||||| |||||||||||||||| ||| ||||||||||||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatt 38227206  T

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Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 112
Target Start/End: Original strand, 38226992 - 38227062
Alignment:
Q  42 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcatt 112  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||  ||| ||||||||||||||    
T  38226992 tcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcatt 38227062  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 112
Target Start/End: Original strand, 38227063 - 38227134
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcatt 112  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| ||| | ||||||||||||    
T  38227063 atcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatt 38227134  T

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Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 27781209 - 27781156
Alignment:
Q  27 tcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcaca 80  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||    
T  27781209 tcaaaattcttcacatcatcacttggaagcttgttcaaatcaaaattcttcaca 27781156  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 27781131 - 27781080
Alignment:
Q  27 tcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttca 78  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  27781131 tcaaaattcttcgcatcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

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Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 109
Target Start/End: Complemental strand, 17663618 - 17663550
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttc 109  Q
    ||||| |||||||||||| ||||||||||||||| | |||||| ||||||||| ||| |||||| ||||    
T  17663618 atcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggtttcatcttc 17663550  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Complemental strand, 27781248 - 27781195
Alignment:
Q  27 tcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttcaca 80  Q
    ||||||||| ||||||||| | |||||  |||||||||||||||||||||||||    
T  27781248 tcaaaattcttcacatcatcaattggatactcgttcaaatcaaaattcttcaca 27781195  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 104
Target Start/End: Original strand, 17700361 - 17700424
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttca 104  Q
    ||||| |||||||||||| |||||||||| |||| | |||||| ||||||||| ||| ||||||    
T  17700361 atcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggtttca 17700424  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 27781170 - 27781120
Alignment:
Q  27 tcaaaattcatcacatcattacttggaagctcgttcaaatcaaaattcttc 77  Q
    ||||||||| ||||||||| | |||||  ||||||||||||||||||||||    
T  27781170 tcaaaattcttcacatcatcaattggatactcgttcaaatcaaaattcttc 27781120  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 21079047 - 21079010
Alignment:
Q  49 ttggaagctcgttcaaatcaaaattcttcacaactttt 86  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21079047 ttggaagctcgttcaaatcaaaattcctaacaactttt 21079010  T

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Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 440929 - 441055
Alignment:
Q  42 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttcaatactttgattag 141  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||  |||||||||| ||| |||||||||||||||  |||||||    
T  440929 tcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattcagtaacaccttcattaatcatcttctcttcaataccatgattag 441028  T
Q  142 aggcagcaggttccttgcaatcttgtg 168  Q
    ||| || ||||||||||||||||||||    
T  441029 aggtaggaggttccttgcaatcttgtg 441055  T

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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 128
Target Start/End: Original strand, 35250178 - 35250265
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttca 128  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||| |||||||||||||||    
T  35250178 atcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcattaatcttcttctcttca 35250265  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 168
Target Start/End: Original strand, 51220034 - 51220161
Alignment:
Q  41 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttcaatactttgatta 140  Q
    ||||| |||||||||||| ||| ||||||||||| | |||||| ||||||||| ||| ||||||| ||| || ||||||||||||||||||   | ||||    
T  51220034 atcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttcactttcgttaatcttcttctcttcaatatcattatta 51220133  T
Q  141 gaggcagcaggttccttgcaatcttgtg 168  Q
    ||||   || ||||||||||||||||||    
T  51220134 gaggagtcatgttccttgcaatcttgtg 51220161  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 131
Target Start/End: Original strand, 51220827 - 51220911
Alignment:
Q  47 acttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttcaata 131  Q
    |||||||||||||||||| ||||||||| | |||| | ||||||||| ||| ||||||| ||| || ||||||||||||||||||    
T  51220827 acttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttcactttcgttaatcttcttctcttcaata 51220911  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 51220459 - 51220427
Alignment:
Q  99 gtttcaccttcattcatcttcttctcttcaata 131  Q
    |||||||||||||| ||||||||||||||||||    
T  51220459 gtttcaccttcattaatcttcttctcttcaata 51220427  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 168
Target Start/End: Original strand, 44989768 - 44989837
Alignment:
Q  99 gtttcaccttcattcatcttcttctcttcaatactttgattagaggcagcaggttccttgcaatcttgtg 168  Q
    ||||||||||| || |||||||||| |||||||   ||||||||| |  |||||||||||||||||||||    
T  44989768 gtttcaccttcgttaatcttcttctattcaatatcatgattagagccttcaggttccttgcaatcttgtg 44989837  T

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