View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_24 (Length: 236)
Name: NF13585_low_24
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 32278349 - 32278499
Alignment:
| Q |
5 |
agtttaccaacttacatactacttgttagactgtttgagagtacttatgaaaacatgttcataagttattttcaatgtatttccataaactccagaatat |
104 |
Q |
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| T |
32278349 |
agtttaccaacttacatactacttgttagactgtttgagagtacttatgaaaacatgttcataagttattttcaatgtatttccataaactccagaatat |
32278448 |
T |
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| Q |
105 |
ctacgaaaacaacttatagcctatatgaaataacttattaataaacattta |
155 |
Q |
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| T |
32278449 |
ctacgaaaacaacttatagcatatatgaaataacttattaataaacattta |
32278499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 32278582 - 32278617
Alignment:
| Q |
184 |
tgtattaactacttacttcgtatcggtggtactgat |
219 |
Q |
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| T |
32278582 |
tgtattaactacttacttcgtatcggtggtactgat |
32278617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 50742796 - 50742830
Alignment:
| Q |
25 |
acttgttagactgtttgagagtacttatgaaaaca |
59 |
Q |
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| T |
50742796 |
acttgttagactgtttgagagaacttatgaaaaca |
50742830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 35713270 - 35713234
Alignment:
| Q |
56 |
aacatgttcataagttattttcaatgtatttccataa |
92 |
Q |
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| T |
35713270 |
aacatgtccataagttattttcaatatatttccataa |
35713234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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