View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_25 (Length: 233)
Name: NF13585_low_25
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14609971 - 14610190
Alignment:
| Q |
1 |
tcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaa |
100 |
Q |
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| T |
14609971 |
tcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggctgcaagttttgctgatttatgggttcccttttgtcgcaa |
14610070 |
T |
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| Q |
101 |
acacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagg |
200 |
Q |
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| T |
14610071 |
acacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagg |
14610170 |
T |
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| Q |
201 |
gtgaagagggagtatgatga |
220 |
Q |
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| T |
14610171 |
gtgaagagggagtatgatga |
14610190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 14598505 - 14598286
Alignment:
| Q |
1 |
tcgcttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaa |
100 |
Q |
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| T |
14598505 |
tcgcttgttatgtttcagatgatggaggagctctcttgagttttgaagcgatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaa |
14598406 |
T |
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| Q |
101 |
acacaatattgagccaaggaatcctgattcttactttgcctcaaatgtcgatccaactaagaacaagagcagattagattttgtgaaggatagaagaagg |
200 |
Q |
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| T |
14598405 |
acacaatattgagccaaggaatcctgattcttactttgcgttaaaaatcgatccaaccaagaacaagagtaaactggatttcgtgaaggacagaagaagg |
14598306 |
T |
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| Q |
201 |
gtgaagagggagtatgatga |
220 |
Q |
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| T |
14598305 |
gtgaaaagggagtacgatga |
14598286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 41491900 - 41491819
Alignment:
| Q |
46 |
aggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctga |
127 |
Q |
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| T |
41491900 |
aggccatggaagaggcagcaagttttgctgatttgtgggttccattttgtcggaagcacaacattgacctaaggaaccctga |
41491819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 137
Target Start/End: Complemental strand, 12194769 - 12194677
Alignment:
| Q |
45 |
gaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttacttt |
137 |
Q |
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| T |
12194769 |
gaggccatggccgaggcagcaagttttgcggagttgtgggttcctttttgtcggaagcacgacattgaaccaaggaacccggaatcttacttt |
12194677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 29919111 - 29918979
Alignment:
| Q |
4 |
cttgttatgtttcagatgatggaggtgctcttttaacattcgaggccatggctgaggccgcaagttttgctgatttatgggttcccttttgtcgcaaaca |
103 |
Q |
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|||| |||||||| |||||||| ||||| |||||||| || ||||| ||||||||||| || || ||||| || |||||||| || || |||||||| |
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| T |
29919111 |
cttgctatgtttctgatgatgggggtgcacttttaacttttgaggcaatggctgaggctgctagctttgccaataactgggttccattctgccgcaaaca |
29919012 |
T |
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| Q |
104 |
caatattgagccaaggaatcctgattcttactt |
136 |
Q |
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| T |
29919011 |
tgatatagagcctaggaatcctgaatcatactt |
29918979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 15419432 - 15419374
Alignment:
| Q |
78 |
ttatgggttcccttttgtcgcaaacacaatattgagccaaggaatcctgattcttactt |
136 |
Q |
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| T |
15419432 |
ttatgggtaccattttgtcgaaaacacaatatcgaaccaaggaatccagatgcttactt |
15419374 |
T |
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