View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13585_low_3 (Length: 600)
Name: NF13585_low_3
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 20 - 583
Target Start/End: Original strand, 26276614 - 26277177
Alignment:
| Q |
20 |
taaagaccaacaaagctgcagcagggaggatgaattgaccaaccttgggtccttaacagatagacttccttcctcatttggtttacataaatccctccaa |
119 |
Q |
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| T |
26276614 |
taaagaccaacaaagctgcagcagggaggatgaattgaccagccttgggtccttcacagatagacctccttcctcatttggtttacataaatccctccaa |
26276713 |
T |
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| Q |
120 |
gccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaa |
219 |
Q |
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| T |
26276714 |
gccaccgtacaaatttttgcctgagtgatatcaccgctccaaataaaggtctttatcatcttggttaactgcttcaaaagattagcaggccaaggataaa |
26276813 |
T |
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| Q |
220 |
catgaaatgagtacagcaacatactatttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgac |
319 |
Q |
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| T |
26276814 |
catgaaatgagtacagcagcatactatttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaacagccaatttgac |
26276913 |
T |
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| Q |
320 |
tttgattctgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaa |
419 |
Q |
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| T |
26276914 |
tttgattatgtccacaataggtcggaaatgatgagcttttgatctgcctttgaagagagggtgcgtgattgtttctaggtgctgcttctgtaaaggccaa |
26277013 |
T |
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| Q |
420 |
ttggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtggagttggttgaaagatgtggcccaacatttggacaattctagtggcg |
519 |
Q |
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| T |
26277014 |
ttggagtcctctgatcatatcttcctgaactgcccggaaacagggatgttgtggagttggttgaaagatgtggcccaacatttggacaattctagtggcg |
26277113 |
T |
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| Q |
520 |
tgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttctgatctctgc |
583 |
Q |
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| T |
26277114 |
tgaatctgctgtccagttgctttgataagggtagcagatttactcatcaggttctgatctctgc |
26277177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 147 - 306
Target Start/End: Original strand, 39398737 - 39398897
Alignment:
| Q |
147 |
atatcaccgctccaaataaaggtctttatcatcttggttaact-gcttcaaaagattagcaggccaaggataaacatgaaatgagtacagcaacatacta |
245 |
Q |
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| T |
39398737 |
atatccccgctctaaataaaattctttatcatcttggttaggttgctgcagaagattggtaggccaaagataaacatgaaacgagtaaagtaacatacta |
39398836 |
T |
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| Q |
246 |
tttatcacagaattgacaagttgtactctccccattatagataacagcaagcctttccaaa |
306 |
Q |
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| T |
39398837 |
ctaatcaccgaattgaccagctgaactcgtcccattatagataacaataagcctttccaaa |
39398897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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