View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13585_low_9 (Length: 450)
Name: NF13585_low_9
Description: NF13585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13585_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 24 - 434
Target Start/End: Original strand, 14609584 - 14609994
Alignment:
| Q |
24 |
catctgattgtgcctatatttcattaatttgcaggttgcttattggtgttcgcttagtagtgatgtgcttctttttacattggagagtgacacatccaaa |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609584 |
catctgattgtgcctatatttcattaatttgcaggttgcttattggtgttcgcttagtagtaatgtgcttctttttacattggagagtgacacatccaaa |
14609683 |
T |
|
| Q |
124 |
taaagaggcagtatggttgtgggttatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaat |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609684 |
taaagaggcagtatggttgtgggttatgtcaattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaat |
14609783 |
T |
|
| Q |
224 |
cgtagcactgacctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacaggaagatctgatctgcctggttgtgacctctttgtgt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609784 |
cgtagcactgacctagacgtccttcatgagaaattccacgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctctttgtgt |
14609883 |
T |
|
| Q |
324 |
cgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609884 |
cgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgt |
14609983 |
T |
|
| Q |
424 |
ttcagatgatg |
434 |
Q |
| |
|
||||||||||| |
|
|
| T |
14609984 |
ttcagatgatg |
14609994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 62 - 434
Target Start/End: Complemental strand, 14598854 - 14598482
Alignment:
| Q |
62 |
cttattggtgttcgcttagtagtgatgtgcttctttttacattggagagtgacacatccaaataaagaggcagtatggttgtgggttatgtcaattactt |
161 |
Q |
| |
|
||||||| | ||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||| ||| | ||||||||||||| |
|
|
| T |
14598854 |
cttattgctattcgcttggtagtgatgtgcttctttttacattggagagtgaccaatccaaatgaagatgcaatatggttatggctcatgtcaattactt |
14598755 |
T |
|
| Q |
162 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaatcgtagcactgacctagacgtccttcatgagaaattcca |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| |||||||||||||| | ||||||| |||||||||| | |
|
|
| T |
14598754 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagcactgaccttgccgtcctttatgagaaatttga |
14598655 |
T |
|
| Q |
262 |
cgttgtaaccccgacaaatcccacaggaagatctgatctgcctggttgtgacctctttgtgtcgacggctgatcctgataaagagccgcctcttgtaact |
361 |
Q |
| |
|
| | | |||| |||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||| |
|
|
| T |
14598654 |
tgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaact |
14598555 |
T |
|
| Q |
362 |
gccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatg |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| |
|
|
| T |
14598554 |
gccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
14598482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 12194907 - 12194801
Alignment:
| Q |
317 |
tttgtgtcgacggctgatcctgataaagagccgcctcttgtaactgccaataccattctttccatattagcagttgattatccagtggagaagctcgctt |
416 |
Q |
| |
|
|||||||| || || ||||| || |||||||| || ||||| || || |||||||||||||| || ||||||||||||| || || || || ||||| | |
|
|
| T |
12194907 |
tttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaataccattctttcaattctagcagttgattaccctgttgataaactcgcat |
12194808 |
T |
|
| Q |
417 |
gttatgt |
423 |
Q |
| |
|
||||||| |
|
|
| T |
12194807 |
gttatgt |
12194801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University