View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13586_high_10 (Length: 250)
Name: NF13586_high_10
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13586_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31734525 - 31734301
Alignment:
| Q |
1 |
tcatcataactggatcgagcatcgcgtacacgaatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaat |
100 |
Q |
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| T |
31734525 |
tcatcataactggatcgagcatcgcgtacacgaatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaat |
31734426 |
T |
|
| Q |
101 |
ttctggctcattcgccgcaatattttgttgagagaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggatt |
200 |
Q |
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| T |
31734425 |
ttctggctcattcgccgcaatattttgttgagagaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggatt |
31734326 |
T |
|
| Q |
201 |
ggtagtgaagaaatgagttttgaga |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
31734325 |
ggtagtgaagaaatgagttttgaga |
31734301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 31711119 - 31710891
Alignment:
| Q |
1 |
tcatcataactggatcgagcatcgcgtacacgaatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaat |
100 |
Q |
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||||||||||||||| || ||| |||| |||| |||||| ||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||| |
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| T |
31711119 |
tcatcataactggattgaccattgcgtgcacgtatggtgccacactcattggattgtccttgagtaatagtttagatgcatcagttaacatatactcaat |
31711020 |
T |
|
| Q |
101 |
ttctggctcattcgccgcaatattttgttgagagaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggatt |
200 |
Q |
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| T |
31711019 |
ttctagctcattccctataacgtttttttgagagaagaagccggagtgagtcatgattcgcatcaagcgatgaatgccgtggttttttgaagggtggatt |
31710920 |
T |
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| Q |
201 |
ggtagtgaagaaatgagttttgagagtgg |
229 |
Q |
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| T |
31710919 |
gatagtgaagaaatgagttttgagagtgg |
31710891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 31702678 - 31702458
Alignment:
| Q |
8 |
aactggatcgagcatcgcgtacacgaatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggc |
107 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||||||||| | |||||||| |||||||||||||| |||||| || |
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| T |
31702678 |
aactggatcgagcatcgcgtgtacaaatggtgtcacgctcatcggattgtccttaagtaataatatcgatgcatcggttaacatatactcgatttctagc |
31702579 |
T |
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| Q |
108 |
tcattcgccgcaatattttgttgagagaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggct-tttttgaagggtggattggtagt |
206 |
Q |
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| T |
31702578 |
tcattctcggtaacattatattgagagaagaaactagaatgagtcattattcgcatcaagcgatgaatg-aagcatgtttttgaagggtggattggtagc |
31702480 |
T |
|
| Q |
207 |
gaagaaatgagttttgagagtg |
228 |
Q |
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||||||| ||||||||||||| |
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| T |
31702479 |
aaagaaataagttttgagagtg |
31702458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 31714085 - 31713885
Alignment:
| Q |
33 |
aatggtgtcacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgag |
132 |
Q |
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||||||||||||||||| || | ||||||||| || | | ||||| |||| |||| ||||| || |||||| |||||||| | | || || |||| | |
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| T |
31714085 |
aatggtgtcacactcatggggtgatccttaagcaacagtatagattcatcggttagaatataatcgatttctagctcattctcagtaacatcgtgttcat |
31713986 |
T |
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| Q |
133 |
agaagaagccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggattggtagtgaagaaatgagttttgagagtggcat |
232 |
Q |
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||||||||||||| |||||||||||| |||| ||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31713985 |
agaagaagccagattgagtcatgatttgcattaagcgatagatgcaggatttttttgaagggtggattggtagtgaagaaatgagttttgaaagtggcat |
31713886 |
T |
|
| Q |
233 |
g |
233 |
Q |
| |
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| |
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| T |
31713885 |
g |
31713885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 228
Target Start/End: Complemental strand, 31684106 - 31683919
Alignment:
| Q |
41 |
cacactcattggattatccttaagtaataatctagatgcatcagttaacatatactcaatttctggctcattcgccgcaatattttgttgagagaagaag |
140 |
Q |
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||||||||||||| | |||||||||| | || |||| ||||||||||||| |||||||| ||| |||||||| | | |||||||||||||||||||| | |
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| T |
31684106 |
cacactcattggactgtccttaagtagtcatagagatacatcagttaacatgtactcaatctctagctcattctcagtaatattttgttgagagaagatg |
31684007 |
T |
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| Q |
141 |
ccagagtgagtcatgattcgcatcaagcgatggatgcaaggcttttttgaagggtggattggtagtgaagaaatgagttttgagagtg |
228 |
Q |
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||||| | ||||||||||| ||||||||||||| | | |||||| ||||| |||||| |||||| ||||||||||||||||| |
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| T |
31684006 |
ccagaatacgtcatgattcgtatcaagcgatggaagtagcaagtttttgtagggttgattggaagtgaactaatgagttttgagagtg |
31683919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 30569928 - 30569883
Alignment:
| Q |
184 |
tttttgaagggtggattggtagtgaagaaatgagttttgagagtgg |
229 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
30569928 |
ttttggaagggtggattggtaacaaagaaatgagttttgagagtgg |
30569883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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