View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13586_low_1 (Length: 657)
Name: NF13586_low_1
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13586_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 568; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 7 - 639
Target Start/End: Original strand, 31997905 - 31998537
Alignment:
| Q |
7 |
aagaatatgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttca |
106 |
Q |
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| T |
31997905 |
aagaaaatgcctcgtggacgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttct |
31998004 |
T |
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| Q |
107 |
tggtaacagttggtttgtttatctttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaatta |
206 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
31998005 |
tggtcacagttggtttgtttatctttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaatta |
31998104 |
T |
|
| Q |
207 |
gtttcttacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaa |
306 |
Q |
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| T |
31998105 |
gtttcttacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaa |
31998204 |
T |
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| Q |
307 |
tgatattgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagc |
406 |
Q |
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| T |
31998205 |
tgatgttgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagc |
31998304 |
T |
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| Q |
407 |
aagagtatatcagatcacgttcgagtgaatactacaaatgggagtgcttcgtcagttggtatccttaaaatcaatattgatgcaggctgttttgaggatc |
506 |
Q |
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| T |
31998305 |
aagagtatatctgatcacgttcgagtgaatactacaaatgggagtgcttcaccagttggtatccttaaaatcaatattcatgcaggctgttttgaggatc |
31998404 |
T |
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| Q |
507 |
atttcacttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagctttgccggaca |
606 |
Q |
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| T |
31998405 |
atttcacttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaaggctccagttttgccggaca |
31998504 |
T |
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| Q |
607 |
ttatgggactgcgttggtgtctccggtggatgt |
639 |
Q |
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| T |
31998505 |
ttatgggactgcgttggtgtctccggtggatgt |
31998537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 468 - 576
Target Start/End: Original strand, 42612827 - 42612936
Alignment:
| Q |
468 |
tccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctgggg-ttgaaagcgtggaatcatgaagggatgctttctgcagctgcaac |
566 |
Q |
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|||||||||| |||||||||||||| ||||||||||| ||||||||||| ||||| |||| | | |||| ||||||||| || |||||||||||||||| |
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| T |
42612827 |
tccttaaaattaatattgatgcaggttgttttgaggaacatttcacttgttggggattgattgtgaggaaccatgaagggttggtttctgcagctgcaac |
42612926 |
T |
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| Q |
567 |
aaagagggag |
576 |
Q |
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|||||||||| |
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| T |
42612927 |
aaagagggag |
42612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 15843026 - 15843120
Alignment:
| Q |
4 |
tcgaagaatatgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgct |
98 |
Q |
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|||||||| || ||||||||||||||||||||||| |||||| ||||||| ||||||| |||||||||||||| ||||||| |||| ||||| |
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| T |
15843026 |
tcgaagaaaatacctcgtggatgtggacttgcatagtaggagatggtcttgttggagggggcaatgtgcctctggagggaagtacattacctgct |
15843120 |
T |
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