View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13586_low_2 (Length: 542)
Name: NF13586_low_2
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13586_low_2 |
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| [»] scaffold0640 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 527
Target Start/End: Original strand, 43503015 - 43503522
Alignment:
| Q |
20 |
ggctatgttgaatgtcatgaattgggtgcaagaattgggactacaaagtgtgaagttctaagtgacttacaagtcctcgtagatgctgtttgtgatagca |
119 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503015 |
ggctatgttgaatgtcatgaactgggtgcaagaattgggactacaaagtgtgaagttctaagtgacttacaagtcctcgtagatgctgtttgtgatagca |
43503114 |
T |
|
| Q |
120 |
gtgatggtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttattcaaagacaagcaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503115 |
gtgatggtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttattcaaagacaagcaga |
43503214 |
T |
|
| Q |
220 |
tatagtagttcataatctaactagagccattttctatgctagtcaccaagtctttgattttgttcctccttgtattttatctcttttaattaataaaatg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
43503215 |
tatagtagttcataatctaactagagccattttctatgctagtcaccaagtctttgattttgttcctccttgtcttttatctcttttaattaataaaatg |
43503314 |
T |
|
| Q |
320 |
agttaactttgtttnnnnnnnnntaacattaccatcggctaaaggacatgattagcctgcaatttctcttcaatggtcttgaagggtttgtttgatagaa |
419 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43503315 |
ggttaactttgttt-aaaaaaaataacattaccatcggctaaaggacatgattagcctgcaatttctcttcaatggtcttgaagggtttgtttgatagaa |
43503413 |
T |
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| Q |
420 |
tacatgagtttcaaaatgatatactaccagaagtagtaaacta-gtgctcgggtgaaatggctcaaaaaggaaagtaagcatgagctaaacatcaaatgc |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43503414 |
tacatgagtttcaaaatgatatactaccagaagtagtaaactaggtactcgggtgaaatggctcaaaaaggaaagtgagcatgagctaaacatcaaatgc |
43503513 |
T |
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| Q |
519 |
atttcttct |
527 |
Q |
| |
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||||||||| |
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| T |
43503514 |
atttcttct |
43503522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 3428131 - 3428005
Alignment:
| Q |
75 |
ttctaagtgacttacaagtcctcgtagatgctgtttgtgatagcagtgatggtgcatcagagttcaatgtcattgttatcaatattagacatattttagt |
174 |
Q |
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|||||| ||||| |||||| || |||||| |||||||| ||||| ||| ||||| | |||||||| ||||||||||| |||||||||| ||||||||| |
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| T |
3428131 |
ttctaaatgactcacaagtattcatagatg-tgtttgtgctagcaatgaaggtgcgtaagagttcagtgtcattgttaacaatattagatgtattttagt |
3428033 |
T |
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| Q |
175 |
ctcgaattgtaactttgaggttaagttt |
202 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3428032 |
ttcgaattgtaactttgaggttaagttt |
3428005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 325
Target Start/End: Complemental strand, 3350841 - 3350764
Alignment:
| Q |
248 |
attttctatgctagtcaccaagtctttgattttgttcctccttgtattttatctcttttaattaataaaatgagttaa |
325 |
Q |
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|||||||||||||||| |||||||||||||||| || ||||| ||||| ||||||||| |||| | ||||||||||| |
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| T |
3350841 |
attttctatgctagtcgtcaagtctttgattttgctcttccttatatttcatctcttttgattattgaaatgagttaa |
3350764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 205
Target Start/End: Complemental strand, 3350992 - 3350884
Alignment:
| Q |
99 |
tagatgctgtttgtgatagcagtgatggtgcatcagagttcaatgtcattgttatcaatat--tagacatattttagtctcgaattgtaactttgaggtt |
196 |
Q |
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|||||| |||||||| ||| | ||| ||||||| ||| ||||||||| |||||| |||||| ||| ||||||||| | | |||||||||||| |||||| |
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| T |
3350992 |
tagatgttgtttgtgctagtaatgagggtgcataagacttcaatgtcgttgttaacaatatattaggcatattttactattgaattgtaacttagaggtt |
3350893 |
T |
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| Q |
197 |
aagtttatt |
205 |
Q |
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||||||||| |
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| T |
3350892 |
aagtttatt |
3350884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 125 - 296
Target Start/End: Original strand, 41193942 - 41194117
Alignment:
| Q |
125 |
ggtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaacttt-gaggttaagtttattcaaagacaagcagatata |
223 |
Q |
| |
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|||||||| ||||| ||||| |||||| || ||||| |||||||||||| ||||| |||||| ||||||||||| |||| || ||||| ||||| |
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| T |
41193942 |
ggtgcatcggagtttaatgtgattgtttacagcattaggtgtattttagtctcaaattgcaacttttgaggttaagttaattctgaggcaagcggatatg |
41194041 |
T |
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| Q |
224 |
gtagttcataatctaactaga---gccattttctatgctagtcaccaagtctttgattttgttcctccttgtattt |
296 |
Q |
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|||| ||||| |||| ||||| ||||||| ||||||||| |||||| | ||||| || | |||||||||||| |
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| T |
41194042 |
gtagctcatactctagctagagcggccatttatgatgctagtcgccaagtttatgattatgctgctccttgtattt |
41194117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 1042874 - 1042952
Alignment:
| Q |
126 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
204 |
Q |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
1042874 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
1042952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 8563 - 8485
Alignment:
| Q |
126 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
204 |
Q |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
8563 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
8485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 33324465 - 33324543
Alignment:
| Q |
126 |
gtgcatcagagttcaatgtcattgttatcaatattagacatattttagtctcgaattgtaactttgaggttaagtttat |
204 |
Q |
| |
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||||||| ||||| ||||| |||||| ||| ||||| |||||||||||| ||||| ||||||||||| |||||||| |
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| T |
33324465 |
gtgcatcggagtttaatgtgattgtttacaacattaggtgtattttagtctcaaattgcaactttgaggtgaagtttat |
33324543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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