View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13586_low_4 (Length: 417)
Name: NF13586_low_4
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13586_low_4 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Original strand, 31734574 - 31734990
Alignment:
| Q |
1 |
catttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734574 |
catttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaatt |
31734673 |
T |
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| Q |
101 |
agtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagactttt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734674 |
agtttccaatttgttggttgagaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagactttt |
31734773 |
T |
|
| Q |
201 |
gccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagaca |
300 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734774 |
gccaaatcattcccacaaatggagtgcattgtgtttgatctaccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagaca |
31734873 |
T |
|
| Q |
301 |
tgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaatatgtttgtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31734874 |
tgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaagtattaagataagtactccatagaaaatactctaatgttaagaatatgtttgtg |
31734973 |
T |
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| Q |
401 |
ttcaagccatgttatca |
417 |
Q |
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|| |||||||||||||| |
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| T |
31734974 |
tttaagccatgttatca |
31734990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 31684195 - 31684539
Alignment:
| Q |
1 |
catttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaatt |
100 |
Q |
| |
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|||||||||| ||||| ||||||| ||| |||| ||| ||| ||||||||||| ||||||||| |||||| || ||||||||||| || ||| ||| |
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| T |
31684195 |
catttgaaacaacacatgggatgtcgtttagggattatcttgcacgtgactccaaaattaacaactcatttaacgaatcaatggcaaaagaaactcgatt |
31684294 |
T |
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| Q |
101 |
agtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagactttt |
200 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||| |||||||| ||| || |
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| T |
31684295 |
agtttccgatttgttggttgagaagtgcaagggagtgttcaatgaagtcgagtcattggttgatgttggaggaggtacagggaccatggcaaaaactctt |
31684394 |
T |
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| Q |
201 |
gccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| ||||||||||||||||| |
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| T |
31684395 |
gccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgctaggaagtgaaaacttaaactatgttggtggagaca |
31684494 |
T |
|
| Q |
301 |
tgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaa |
345 |
Q |
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|||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
31684495 |
tgtttaaagaaattccgccaacagctgcaattttgttgaaggtaa |
31684539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 29 - 346
Target Start/End: Original strand, 31711196 - 31711513
Alignment:
| Q |
29 |
atgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaattagtttccaatttgttggttgaaaagtgc |
128 |
Q |
| |
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|||||| |||||||| |||||||| || |||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||||||||||| || ||| |
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| T |
31711196 |
atgggagtatgctgcacgtgactccgaaattaacaacttatttaacgagtcaatggcaaatgatactcgattagtttctgatttgttggttgagaaatgc |
31711295 |
T |
|
| Q |
129 |
aagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgca |
228 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
31711296 |
aagggagtgttcaatgaagttgagtcattggttgatgttggaggaggtacggggaccatggcaaagactcttgtcaaatcattcccacaaatggagtgca |
31711395 |
T |
|
| Q |
229 |
ttgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgc |
328 |
Q |
| |
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|||| |||||||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||||||||||| |||||||| ||| | ||||| |
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| T |
31711396 |
ttgtgtttgatcttccacatgttgttgatggcttgcaaggaagtgaaaagctaagatatgttggtggagacatgtttaaggaaattccaccagcagatgc |
31711495 |
T |
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| Q |
329 |
aattctgttgaaggtaaa |
346 |
Q |
| |
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|||| ||||||||||||| |
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| T |
31711496 |
aattttgttgaaggtaaa |
31711513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31702734 - 31703079
Alignment:
| Q |
1 |
catttgaaacgacacacgggatgttgttatgggaatatgctgcgtgtgactccaaatttaacaacttatttaatgagtcaatggcaaatgatgctcaatt |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||| ||||||| |||| ||| ||| |
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| T |
31702734 |
catttgaaacgacacacaggatgttgttatgggaatatgttgcgtgtgactccaaatttagcaacttattcaatgagtccatggcaagtgatactcgatt |
31702833 |
T |
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| Q |
101 |
agtttccaatttgttggttgaaaagtgcaagggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagactttt |
200 |
Q |
| |
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||| ||||||||||| |||| ||||||| |||||| ||||||| || ||||||||||||||||||||||| || |||||||| ||||||||| | || |
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| T |
31702834 |
agtgaccaatttgttgattgagaagtgcaggggagtattcaatgggttggagtcattggttgatgttggaggtggcacagggaccatggcaaaggccctt |
31702933 |
T |
|
| Q |
201 |
gccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagaca |
300 |
Q |
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|| |||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| |
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| T |
31702934 |
gctaaatcattcccacaaatggagtttagtgtatttgatctaccacatgttgttgatggcttgcaaggtagtgagaatctaaactatgttggtggagaca |
31703033 |
T |
|
| Q |
301 |
tgtttaaagaaattccgccaaccgatgcaattctgttgaaggtaaa |
346 |
Q |
| |
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|||||||||||||||| ||||| || || ||| ||||||||||||| |
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| T |
31703034 |
tgtttaaagaaattcctccaacagacgccattttgttgaaggtaaa |
31703079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 132 - 348
Target Start/End: Original strand, 31714268 - 31714484
Alignment:
| Q |
132 |
ggagtgttcaatgaatttgagtcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattg |
231 |
Q |
| |
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||||||||||||| ||| || ||||||||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||| | ||||||| || |
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| T |
31714268 |
ggagtgttcaatggattggaatcattggttgatgttggaggaggcacagggaccatggcaaaggctcttgccaaatcattcccacaattagagtgcactg |
31714367 |
T |
|
| Q |
232 |
tatttgatcttccacatgttgttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgtttaaagaaattccgccaaccgatgcaat |
331 |
Q |
| |
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| |||||||||||||||||||||||||| ||||||||| |||| || ||| ||||||||||||||| |||||||| |||||| ||| | ||||| || |
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| T |
31714368 |
tgtttgatcttccacatgttgttgatggcttgcaaggaggtgataacttaaactatgttggtggagatatgtttaagagaattcctccagctgatgctat |
31714467 |
T |
|
| Q |
332 |
tctgttgaaggtaaagt |
348 |
Q |
| |
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| ||||||||||||||| |
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| T |
31714468 |
tttgttgaaggtaaagt |
31714484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 153 - 305
Target Start/End: Original strand, 30570306 - 30570458
Alignment:
| Q |
153 |
tcattggttgatgttggaggaggaacagggactatggcaaagacttttgccaaatcattcccacaaatggagtgcattgtatttgatcttccacatgttg |
252 |
Q |
| |
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||||||||||||||||| ||||| | ||||||||| | ||| |||| || ||||||||| | || ||||||||||||||||||||||||||||||| |
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| T |
30570306 |
tcattggttgatgttggtggaggcatagggactattactaaggtcattgctaagtcattcccaaacattgagtgcattgtatttgatcttccacatgttg |
30570405 |
T |
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| Q |
253 |
ttgatggtttgcaaggaagtgagaatctaagctatgttggtggagacatgttt |
305 |
Q |
| |
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||||||| || ||||||||||| || ||| |||||||| || ||||||||| |
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| T |
30570406 |
ttgatggcttacaaggaagtgaaaacttaaaatatgttggaggtgacatgttt |
30570458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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