View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13586_low_5 (Length: 401)
Name: NF13586_low_5
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13586_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 24 - 386
Target Start/End: Complemental strand, 14734870 - 14734508
Alignment:
| Q |
24 |
gcagagagaaacagagggttctttttattgccaaaaactaagtgacggctatgtttatataatgagaggcattttgaaagcttataataattttgatagt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14734870 |
gcagagagaaacagagggttctttttattgccaaaaactaggtgacggctatgtttatataatgagaggcattttgaaagcttataataatttcgatagt |
14734771 |
T |
|
| Q |
124 |
atggtacatccaacacttctgatcgaaagtgtgtttggcgtttaacatgtgtcagtatctaacactttaagagtgattaaatttaattccatcattctct |
223 |
Q |
| |
|
| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14734770 |
acggtacaaccaacacttctgattgaaagtgtgtttggcgtttgacatgtgtcagtatctaacacttcaagagtgattaaatttaattccatcattctct |
14734671 |
T |
|
| Q |
224 |
caaaaattattactagctagtgtagaaatactggtgtgaatgtcgtgtcgtgtgtctatgtcggtgnnnnnnnatataataattgagaaggccgataaaa |
323 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
14734670 |
caaaaattattactaactagtgtggaagtaccggtgtgaatgtcgtatcgtgtgtctatgtcgatgttttcgtatataataattgagaaggccgataaaa |
14734571 |
T |
|
| Q |
324 |
agtgcaaaatattcttgataattccagccatttatgatttatcctttattattctttcttcct |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14734570 |
agtgcaaaatattcttgataattccagccatttatgatttatcctttattattctttcttcct |
14734508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 176
Target Start/End: Complemental strand, 36286559 - 36286519
Alignment:
| Q |
136 |
acacttctgatcgaaagtgtgtttggcgtttaacatgtgtc |
176 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
36286559 |
acacttctgatcgaaagtgtgtctggtgttcaacatgtgtc |
36286519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University