View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13586_low_7 (Length: 370)

Name: NF13586_low_7
Description: NF13586
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13586_low_7
NF13586_low_7
[»] chr6 (1 HSPs)
chr6 (1-359)||(13627831-13628189)
[»] chr7 (4 HSPs)
chr7 (82-188)||(9416179-9416284)
chr7 (294-360)||(4634017-4634083)
chr7 (248-302)||(22763439-22763493)
chr7 (295-360)||(32238934-32238999)
[»] chr1 (1 HSPs)
chr1 (294-349)||(23971075-23971130)
[»] chr8 (2 HSPs)
chr8 (298-360)||(15151308-15151370)
chr8 (298-349)||(16822009-16822060)
[»] chr3 (1 HSPs)
chr3 (294-348)||(9021814-9021868)
[»] chr2 (1 HSPs)
chr2 (294-349)||(19569593-19569648)
[»] chr4 (1 HSPs)
chr4 (299-349)||(17405187-17405237)


Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 13628189 - 13627831
Alignment:
Q  1 tacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaacaaatagaattaagccattatcaccatctttcaaatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628189 tacgtttctacttctcctgatattgttctaagttcctttaaaaccctagtagcctacaccaacaaatagaattaagccattatcaccatctttcaaatag 13628090  T
Q  101 tttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtagtgtgctgctgttaggaggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13628089 tttcaaaatcttattctaaacttgtgtagcttcgaagtttgaattcttccactattgcaagcaatttgtgcggctttgtagtgtgctgctgttaggaggg 13627990  T
Q  201 aagtgcctaaggtaaggcttttttcccatacatttttaccaaatgctaaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13627989 aagtgcctaaggtaaggcttttttcccatacatttttaccaagtgctaaattgatattgaatctcaaaagggtgctctacataataaatttggcaaagat 13627890  T
Q  301 tcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttca 359  Q
    ||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||    
T  13627889 tcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttca 13627831  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 188
Target Start/End: Complemental strand, 9416284 - 9416179
Alignment:
Q  82 atcaccatctttcaaatagtttcaaaatcttattctaaacttgtgtagcttcgaagtttgaatccttccactattgcaagcaatttgtgcggctttgtag 181  Q
    |||||||||||||||||| |||| || |||||||| ||||||| |||||||  || |||||||| ||||  | ||||||||| ||| |||||||||||||    
T  9416284 atcaccatctttcaaataatttccaagtcttattccaaacttg-gtagctttaaattttgaatctttcccatgttgcaagcattttctgcggctttgtag 9416186  T
Q  182 tgtgctg 188  Q
    | |||||    
T  9416185 tatgctg 9416179  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 360
Target Start/End: Original strand, 4634017 - 4634083
Alignment:
Q  294 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 360  Q
    |||||||||||| |||| ||||||||||||||||||| ||   ||||||||||||| || |||||||    
T  4634017 caaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcat 4634083  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 248 - 302
Target Start/End: Complemental strand, 22763493 - 22763439
Alignment:
Q  248 aaattgatattgaatctcaaaagggtgctctacataaaaaatttggcaaagattc 302  Q
    ||||||||||||||||||||||||||||||| |||| |   ||||||||||||||    
T  22763493 aaattgatattgaatctcaaaagggtgctctccatatattttttggcaaagattc 22763439  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 32238934 - 32238999
Alignment:
Q  295 aaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 360  Q
    ||||||||||||||| |||||| ||||| ||||||||||   || |||||||||| ||| ||||||    
T  32238934 aaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttttggttcat 32238999  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 23971075 - 23971130
Alignment:
Q  294 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 349  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||||||||||||    
T  23971075 caaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 23971130  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 15151370 - 15151308
Alignment:
Q  298 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtcatttcgttcat 360  Q
    |||| ||||||||||| |||||||||||||||||||   ||||||||||||| ||||||||||    
T  15151370 gatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcat 15151308  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 349
Target Start/End: Complemental strand, 16822060 - 16822009
Alignment:
Q  298 gattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 349  Q
    ||||||||||||||||||||||| | ||||||||||   |||||||||||||    
T  16822060 gattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtc 16822009  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 9021814 - 9021868
Alignment:
Q  294 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagt 348  Q
    |||||||||||||||||||| |||||||| ||||||||||   ||||||||||||    
T  9021814 caaagattcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagt 9021868  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 19569648 - 19569593
Alignment:
Q  294 caaagattcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 349  Q
    |||| ||||||| |||||||||||||||| ||||||||||   |||||||||||||    
T  19569648 caaaaattcatatttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtc 19569593  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 17405187 - 17405237
Alignment:
Q  299 attcatacttgtgtttttcttgcataatgtcaaattttatgtttaatagtc 349  Q
    ||||||||||||||| |||||||| ||||||||||   |||||||||||||    
T  17405187 attcatacttgtgttcttcttgcacaatgtcaaatgaaatgtttaatagtc 17405237  T

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