View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13587_high_1 (Length: 901)
Name: NF13587_high_1
Description: NF13587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13587_high_1 |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 853; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 853; E-Value: 0
Query Start/End: Original strand, 18 - 894
Target Start/End: Complemental strand, 11577587 - 11576711
Alignment:
| Q |
18 |
caaagatggtagaacgactgatgcatactgtgttgccaagtatggaaacaaatgggttagaacaagaactctgcttgacacgctgtcccctagatggaat |
117 |
Q |
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| T |
11577587 |
caaagatggtagaactactgatgcatactgtgttgccaagtatggaaacaaatgggttagaacaagaactctgcttgacacactgtcccctagatggaat |
11577488 |
T |
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| Q |
118 |
gagcagtatacatgggaggttcatgatccatgcactgtgatcacagttagtgtttttgacaatcaccacctcaatggtagcagtgaccacaaagatcaga |
217 |
Q |
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| T |
11577487 |
gagcagtatacatgggaggttcatgatccatgcactgtgatcacagttagtgtttttgacaatcaccacctcaatggtagcagcgaccacaaagatcaga |
11577388 |
T |
|
| Q |
218 |
gaattggaaaggtgagaataaggttatcaactcttgaaactgatagagtttatactcattattatcctcttttggttcttcaacctaacggtttaaaaaa |
317 |
Q |
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| T |
11577387 |
ggattggaaaggtgagaataaggttatcaactcttgaaactgatagagtttatactcattactatcctcttttggttcttcaacctaacggtttaaaaaa |
11577288 |
T |
|
| Q |
318 |
gaatggagagctgcacttggcagtgaggtttacttgcacagcttgggttaatatggtagctcaatatggaagacctttgcttcccaaaatgcattatgtt |
417 |
Q |
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| T |
11577287 |
gaatggagagctgcacttggcagtgaggtttacttgcacagcttgggttaatatggtagctcaatatggaagacctttgcttcccaaaatgcattatgtt |
11577188 |
T |
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| Q |
418 |
caaccgatacctgttagacacattgattggctccgctatcaggccatgcagattgtggcggcaaggctagcaagagctgagccgccgcttcgacgtgaat |
517 |
Q |
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| T |
11577187 |
caaccgatacctgttagacacattgattggctccgctatcaggccatgcagattgtggcggcaaggctagcaagagctgagccgccgcttcgacgtgaat |
11577088 |
T |
|
| Q |
518 |
cagtcgagtatatgcttgatgtggattaccatatgtggagtctaaggagaagcaaagccaattttcatcgcataatgtcactactctcgggttttactgc |
617 |
Q |
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| T |
11577087 |
cagtcgagtatatgcttgatgtggattaccatatgtggagtctaaggagaagcaaagccaattttcatcgcataatgtcactactctcgggttttactgc |
11576988 |
T |
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| Q |
618 |
tgtgtgtaaatggcttaacgacatttgcacttggagaaacccaattacaacttgccttgttcatgtcttgttcttgatacttgtttgctaccctgaattg |
717 |
Q |
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| T |
11576987 |
tgtgtgtaaatggcttaacgacatttgcacttggagaaacccaattacaacttgccttgttcatgtcttgttcttgatacttgtttgctaccctgaattg |
11576888 |
T |
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| Q |
718 |
atactgccaactatttttctttacttgtttgtgattgggatttggaattaccggttccggccaaggaatccaccccacatggatgctaggctttcacagg |
817 |
Q |
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| T |
11576887 |
atactgccaactatttttctttacttgtttgtgattgggatttggaattaccggttccggccaaggaatccaccccacatggatgctaggctttcacagg |
11576788 |
T |
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| Q |
818 |
cagaagcttgtcatccagatgaattggatgaggaatttgacacttttccaactacaagacctgctgatattcttcga |
894 |
Q |
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| T |
11576787 |
cagaagcttgtcatccagatgaattggatgaggaatttgacacttttccaactacaagacctgctgatattgttcga |
11576711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 581
Target Start/End: Complemental strand, 24950007 - 24949955
Alignment:
| Q |
529 |
atgcttgatgtggattaccatatgtggagtctaaggagaagcaaagccaattt |
581 |
Q |
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| T |
24950007 |
atgcttgatgtggattcacatatgtggagtatgagaagaagcaaagccaattt |
24949955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 7915864 - 7915795
Alignment:
| Q |
111 |
atggaatgagcagtatacatgggaggttcatgatccatgcactgtgatcacagttagtgtttttgacaat |
180 |
Q |
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| T |
7915864 |
atggaatgagcaatacacatgggaagtttatgatccttgcactgtcataacactaggtgtttttgacaat |
7915795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 523 - 582
Target Start/End: Complemental strand, 3238 - 3179
Alignment:
| Q |
523 |
gagtatatgcttgatgtggattaccatatgtggagtctaaggagaagcaaagccaatttt |
582 |
Q |
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| T |
3238 |
gagtacatgcttgatgtggattcacatatatggagtttaagaagaagcaaagcaaatttt |
3179 |
T |
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