View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13587_low_10 (Length: 202)
Name: NF13587_low_10
Description: NF13587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13587_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 94; Significance: 4e-46; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 45924496 - 45924605
Alignment:
| Q |
16 |
gttttccctggtcttgttatcagaattatcactcccaccaatactaggaaattgttgaagacctagatagagagtgtatattatatgctcaattaattat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |
|
|
| T |
45924496 |
gttttccctggtcttgttatcagaattatcactcccaccaatactaggaaattgttgaagacctagatagagagcatatattataagctcaattaatcat |
45924595 |
T |
|
| Q |
116 |
ctagtaagtt |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
45924596 |
ctagtaagtt |
45924605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 45936444 - 45936553
Alignment:
| Q |
16 |
gttttccctggtcttgttatcagaattatcactcccaccaatactaggaaattgttgaagacctagatagagagtgtatattatatgctcaattaattat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| || |
|
|
| T |
45936444 |
gttttccctggtcttgttatcagaattatcactcccaccaatactaggaaattgttgaagacctagatagagagcatatattataagctcaattaatcat |
45936543 |
T |
|
| Q |
116 |
ctagtaagtt |
125 |
Q |
| |
|
|||||||||| |
|
|
| T |
45936544 |
ctagtaagtt |
45936553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 23225740 - 23225697
Alignment:
| Q |
129 |
gtccatagttggctagcttgccctcttgattgtctgggcatttg |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23225740 |
gtccatagttggctagcttgccctcttgtttgtctgggcatttg |
23225697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 37049433 - 37049477
Alignment:
| Q |
129 |
gtccatagttggctagcttgccctcttgattgtctgggcatttga |
173 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37049433 |
gtccatggttggctagcttgcccctttgattgtctgggcatttga |
37049477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 2306961 - 2306919
Alignment:
| Q |
127 |
gtgtccatagttggctagcttgccctcttgattgtctgggcat |
169 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
2306961 |
gtgttcatagttggcttgcttgccctcttgattatctgggcat |
2306919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University