View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13587_low_4 (Length: 427)

Name: NF13587_low_4
Description: NF13587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13587_low_4
NF13587_low_4
[»] chr7 (2 HSPs)
chr7 (1-249)||(37204732-37204980)
chr7 (330-424)||(37205057-37205151)
[»] chr5 (3 HSPs)
chr5 (335-407)||(16465055-16465127)
chr5 (335-407)||(16472011-16472083)
chr5 (350-400)||(24179611-24179661)
[»] chr2 (1 HSPs)
chr2 (334-402)||(12261627-12261695)
[»] chr1 (1 HSPs)
chr1 (197-246)||(25732872-25732921)
[»] chr4 (3 HSPs)
chr4 (332-400)||(7848053-7848121)
chr4 (332-382)||(52418098-52418148)
chr4 (29-105)||(23480632-23480708)
[»] chr3 (4 HSPs)
chr3 (348-427)||(5050158-5050237)
chr3 (19-64)||(33282897-33282942)
chr3 (332-376)||(36455559-36455603)
chr3 (19-63)||(42339955-42339999)
[»] scaffold0007 (2 HSPs)
scaffold0007 (142-204)||(174138-174200)
scaffold0007 (332-381)||(190394-190443)
[»] chr6 (1 HSPs)
chr6 (198-246)||(31838573-31838621)


Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 37204732 - 37204980
Alignment:
Q  1 ccattaccctcccttcaacaaactcagataaaaaatgtctatgtggaagtttaatgttaagttgatgagttctaatttactgcttttaaaactaagatac 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  37204732 ccattaccctcccttcaacaaactcagataaaaaatgtttatgtggaagtttaatgttaaattggtgagttctaatttactgcttttaaaactaagatac 37204831  T
Q  101 ataggcatggttgtaaaattcgtgagtagactcgtacactcgtacgagtatagaaggcaaaaacgagtggaatcactcatagaattgtttttctgctaga 200  Q
    ||| |||||||| | ||||||||||||||||||||||    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37204832 ataagcatggttctcaaattcgtgagtagactcgtacgagtgtacgagtctagaaggcaaaaatgagtggaatcactcatagaattgtttttctgctaga 37204931  T
Q  201 ctcgtacaaactcgcatagaatcacgagtctatgacgagtttatgattg 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37204932 ctcgtacaaactcgcatagaatcacgagtctatgacgagtttatgattg 37204980  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 37205057 - 37205151
Alignment:
Q  330 cttcttttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtcacgctcatattcttcgac 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  37205057 cttcttttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtcacgctcacattcttcgac 37205151  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 16465055 - 16465127
Alignment:
Q  335 tttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtca 407  Q
    |||||||||| | |||||||||||||| |||||||| |||||||| |||||||||||  ||||||||| ||||    
T  16465055 tttctttttcgatctcactctcaatttagaaacaaatctctcactttcaccaaagatacaagaattcaggtca 16465127  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 335 - 407
Target Start/End: Original strand, 16472011 - 16472083
Alignment:
Q  335 tttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtca 407  Q
    ||||||||||   |||||||||||||| |||||||| ||||||||||||||||| || |||||||||| ||||    
T  16472011 tttctttttcggtctcactctcaatttagaaacaaatctctcactctcaccaaaaatagaagaattcaggtca 16472083  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 350 - 400
Target Start/End: Complemental strand, 24179661 - 24179611
Alignment:
Q  350 cactctcaattttgaaacaaaactctcactctcaccaaagatggaagaatt 400  Q
    |||| ||||||| |||||||||||||||| |||||||||||| ||||||||    
T  24179661 cactttcaatttagaaacaaaactctcaccctcaccaaagatagaagaatt 24179611  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 12261695 - 12261627
Alignment:
Q  334 ttttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattca 402  Q
    ||||||||||| |  ||||||||||||| ||||||||||||||||||||||  ||||| ||||||||||    
T  12261695 ttttctttttcgatttcactctcaatttagaaacaaaactctcactctcactcaagatagaagaattca 12261627  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 25732921 - 25732872
Alignment:
Q  197 tagactcgtacaaactcgcatagaatcacgagtctatgacgagtttatga 246  Q
    |||||||||| ||||||||||||| |||| ||||||||||||||||||||    
T  25732921 tagactcgtaaaaactcgcatagactcacaagtctatgacgagtttatga 25732872  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 332 - 400
Target Start/End: Original strand, 7848053 - 7848121
Alignment:
Q  332 tcttttctttttctacctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaatt 400  Q
    |||||| |||||| | ||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||    
T  7848053 tcttttatttttcgatctcactctccatttagaaacaaaattctcactctcacgaaagatagaagaatt 7848121  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 52418148 - 52418098
Alignment:
Q  332 tcttttctttttctacctcactctcaattttgaaacaaaactctcactctc 382  Q
    ||||||||||||| | ||||||||||||||  |||||||||||||||||||    
T  52418148 tcttttctttttcgatctcactctcaatttaaaaacaaaactctcactctc 52418098  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 23480708 - 23480632
Alignment:
Q  29 taaaaaatgtctatgtggaagtttaatgttaagttgatgagttctaatttactgcttttaaaactaagatacatagg 105  Q
    |||||| ||| ||||| || |||||||||||||||| || |||| |||| |||||| | ||||||| ||| ||||||    
T  23480708 taaaaagtgtttatgttgatgtttaatgttaagttggtgggttcaaattcactgctctcaaaactatgattcatagg 23480632  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 348 - 427
Target Start/End: Original strand, 5050158 - 5050237
Alignment:
Q  348 ctcactctcaattttgaaacaaaactctcactctcaccaaagatggaagaattcaagtcacgctcatattcttcgacatc 427  Q
    ||||||||||||||  ||| | ||||||||||||||| |||||| |||||||| | ||||| ||||||||| || |||||    
T  5050158 ctcactctcaatttaaaaaaacaactctcactctcactaaagatagaagaattaaggtcacactcatattcgtcaacatc 5050237  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 33282942 - 33282897
Alignment:
Q  19 caaactcagataaaaaatgtctatgtggaagtttaatgttaagttg 64  Q
    ||||||||| |||||| ||| |||||||| ||||||||||||||||    
T  33282942 caaactcagttaaaaagtgtttatgtggacgtttaatgttaagttg 33282897  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 36455603 - 36455559
Alignment:
Q  332 tcttttctttttctacctcactctcaattttgaaacaaaactctc 376  Q
    ||||||||||||| | |||||||||||||| |||| |||||||||    
T  36455603 tcttttctttttcgatctcactctcaatttagaaataaaactctc 36455559  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 42339999 - 42339955
Alignment:
Q  19 caaactcagataaaaaatgtctatgtggaagtttaatgttaagtt 63  Q
    |||||||| | ||||||||| |||||||| |||||||||||||||    
T  42339999 caaactcaaacaaaaaatgtttatgtggatgtttaatgttaagtt 42339955  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 174200 - 174138
Alignment:
Q  142 gtacgagtatagaaggcaaaaacgagtggaatcactcatagaattgtttttctgctagactcg 204  Q
    |||||||| || ||||||||||||| ||||||||| |||||||| | |||| || ||||||||    
T  174200 gtacgagtctaaaaggcaaaaacgaatggaatcacgcatagaatcgcttttgtggtagactcg 174138  T

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Target: scaffold0007; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 381
Target Start/End: Complemental strand, 190443 - 190394
Alignment:
Q  332 tcttttctttttctacctcactctcaattttgaaacaaaactctcactct 381  Q
    ||||||||||||| | |||| ||||||||| ||||||||||| |||||||    
T  190443 tcttttctttttcgatctcattctcaatttagaaacaaaactttcactct 190394  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 31838573 - 31838621
Alignment:
Q  198 agactcgtacaaactcgcatagaatcacgagtctatgacgagtttatga 246  Q
    |||||||||||| |||||||||| ||  |||||||||||||| ||||||    
T  31838573 agactcgtacaacctcgcatagactcgtgagtctatgacgagcttatga 31838621  T

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