View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13587_low_9 (Length: 219)
Name: NF13587_low_9
Description: NF13587
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13587_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 289967 - 289788
Alignment:
| Q |
23 |
tccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttg |
122 |
Q |
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| T |
289967 |
tccagcggtaacattcttttgatttaaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttcggatgcccattcccacttg |
289868 |
T |
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| Q |
123 |
agtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
202 |
Q |
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| T |
289867 |
agtgtgtttcctaatgaacaagtacacaacaatgctaaacatgcagtaagaaatatactaaaccttggattagacatatt |
289788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 30 - 113
Target Start/End: Complemental strand, 279515 - 279432
Alignment:
| Q |
30 |
gtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttcggatgcccat |
113 |
Q |
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| T |
279515 |
gtaacactcttttgatctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcggatgtccat |
279432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 278179 - 278110
Alignment:
| Q |
133 |
ctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
202 |
Q |
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||||||||||||| ||||||||| ||| |||||| |||||||| | | |||| ||| |||||||||||| |
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| T |
278179 |
ctgatgaacaagtgtacaacaatgctaagcatgcaataagaaatgtcccaaacatagcattagacatatt |
278110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 24525021 - 24524842
Alignment:
| Q |
23 |
tccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| |||||||||||||||||| |
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| T |
24525021 |
tccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcattggttcagatgcccattcccacttg |
24524922 |
T |
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| Q |
123 |
agtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
202 |
Q |
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|||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24524921 |
agtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatt |
24524842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 23 - 202
Target Start/End: Complemental strand, 24531694 - 24531515
Alignment:
| Q |
23 |
tccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtccctctgcctagtaatgtgtcttgcattggttcggatgcccattcccacttg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
24531694 |
tccagcagtaacattcttttgatctaaaagtttagatgcagtaaatgtcccttggcctagtaaggtgtcttgcattggttcagatgcccattcccacttg |
24531595 |
T |
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| Q |
123 |
agtgtgtttcctgatgaacaagtacacaacaatgataaacatgcagtaagaaatatactaaacctaggattagacatatt |
202 |
Q |
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|||| ||||||| |||||||||||||||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
24531594 |
agtgggtttcctaatgaacaagtacacaataatgctaaacatgcagtaagaaatgtacgaaacctaggattagacatatt |
24531515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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