View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_high_1 (Length: 696)
Name: NF13588_high_1
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 16 - 319
Target Start/End: Original strand, 42913186 - 42913492
Alignment:
| Q |
16 |
atcatacaaaggaacatattactgaaaaggttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactggtagtaagtactatag |
115 |
Q |
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| T |
42913186 |
atcatacaaaggaacatattactgaaaaggttacattaggtaaattcaaatgggtcatcacatcacccatacatttagctactagtagtaagtactatag |
42913285 |
T |
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| Q |
116 |
ctattttattacaccactaaacaagtaacaagaagaagacatt---caacaagacataatgaaacttaacttaaagtgattaatgtaattaaccactctc |
212 |
Q |
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| T |
42913286 |
ctattttattacaccactaaacaagtaacaagaaaaagacattaaacaacaagacatagtgaaacttaacttaaagtgattaatgtaattaaccactctc |
42913385 |
T |
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| Q |
213 |
tctaattaaacacttccataaacttcacacattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttg |
312 |
Q |
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| T |
42913386 |
tctaattaaacacttccataaacttcacacattttctccttattcactcttctcaattggagcctcttcttcattcttctcaatttttgcatcattgttg |
42913485 |
T |
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| Q |
313 |
gtgatca |
319 |
Q |
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||||||| |
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| T |
42913486 |
gtgatca |
42913492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 402 - 673
Target Start/End: Original strand, 42913575 - 42913846
Alignment:
| Q |
402 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatgttctgtctcagattcttcagctggtttttcttgaacaacctcaaca |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
42913575 |
aacattgtccttagtttcaggctcagctaccacattctcatccttaacaacatttactgtctcagactcttcagctggtttttcctgaacagcctcaaca |
42913674 |
T |
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| Q |
502 |
acagaatcaccgttttctttcgtttcctcaacattaaccgaatcaacattttcttttgtttcctcgacaggttcctttgtctcggtttgttcttccttct |
601 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42913675 |
acagaatcaccgttttctttcgtttcctcaacattaagagaattaccgttttcttttgtttcctcgacaggttcctttgtctcggtttgttcttccttct |
42913774 |
T |
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| Q |
602 |
ttgttgcctcttctgtatctttcgcaggaacaacaacttcttctaccacctctttagcctcagctttaacca |
673 |
Q |
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||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42913775 |
ttgtttcctcttctgtatctttcacaggcacaacaacttcttctaccacctctttagtctcagctttaacca |
42913846 |
T |
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