View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_high_11 (Length: 354)
Name: NF13588_high_11
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 39801298 - 39800946
Alignment:
| Q |
1 |
acctagacaaataatcaggaatggaaccccataacaagttttttaatgagcttaaatctccatttctttttaggtttcaggcaaggggcgcatcactagg |
100 |
Q |
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| T |
39801298 |
acctagacaaataatcaggaatggaaccccataacaagttttttaatgagcttaaatctccatttctttttaggtttcaggcaaggggcgcatccctagg |
39801199 |
T |
|
| Q |
101 |
atggccctaggaggaccccatccatagaggtgaaagggttaagtatatgggcctcatcatagagatgtttttgttctttttgtaactattgtaaacggtg |
200 |
Q |
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| T |
39801198 |
atggccctaggaggaccccatccatagaggtgaaagggttaagtatatgggcctcatcatagagatgtttttgttctttttgtgactattgtaaacggtg |
39801099 |
T |
|
| Q |
201 |
acacaagtaaacaaaccaaaaataaataccccagttcaagtctcgagtaacaagcttaggaaaaaagaagttgggtcagtgactacatttaccatacata |
300 |
Q |
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| T |
39801098 |
acacaagtaaacaaaccaaaaataaataccccagttcaagtctcgagtaacaagcttaggaaaaaagaagttgggtcagtgactacacttaccatacata |
39800999 |
T |
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| Q |
301 |
attgctccaataaatgcatccccagcaccagtggtatcaataagctcagaatc |
353 |
Q |
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| T |
39800998 |
attgctccaataaatgcatccccagcaccagtggtatcaataagctcagaatc |
39800946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 29932343 - 29932400
Alignment:
| Q |
290 |
taccatacataattgctccaataaatgcatccccagcaccagtggtatcaataagctc |
347 |
Q |
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| T |
29932343 |
taccatataaaactgctccaacaaatgcatccccagcaccagttgtatcaataagctc |
29932400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 347
Target Start/End: Original strand, 29925694 - 29925735
Alignment:
| Q |
306 |
tccaataaatgcatccccagcaccagtggtatcaataagctc |
347 |
Q |
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| T |
29925694 |
tccaataaatgcatccccggcaccagtggtatcaacaagctc |
29925735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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