View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13588_high_21 (Length: 239)

Name: NF13588_high_21
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13588_high_21
NF13588_high_21
[»] chr6 (15 HSPs)
chr6 (76-223)||(2543212-2543360)
chr6 (75-223)||(27312111-27312262)
chr6 (78-223)||(32274565-32274711)
chr6 (77-221)||(7156236-7156381)
chr6 (78-223)||(29452542-29452688)
chr6 (76-223)||(31170988-31171136)
chr6 (77-178)||(5008308-5008409)
chr6 (78-142)||(8504733-8504797)
chr6 (78-223)||(18742078-18742223)
chr6 (75-109)||(32274431-32274465)
chr6 (172-223)||(8504796-8504848)
chr6 (77-109)||(27312362-27312394)
chr6 (78-109)||(29302517-29302548)
chr6 (76-109)||(7156471-7156504)
chr6 (77-109)||(12174699-12174731)
[»] chr5 (16 HSPs)
chr5 (77-223)||(29875085-29875232)
chr5 (78-223)||(12398946-12399092)
chr5 (77-223)||(23090429-23090576)
chr5 (78-223)||(4695162-4695308)
chr5 (77-223)||(34208669-34208816)
chr5 (84-223)||(4145825-4145965)
chr5 (78-223)||(42757805-42757949)
chr5 (78-223)||(22645909-22646055)
chr5 (93-223)||(3077728-3077859)
chr5 (98-147)||(19574894-19574943)
chr5 (77-109)||(41610372-41610404)
chr5 (77-109)||(42793564-42793596)
chr5 (78-109)||(12399192-12399223)
chr5 (78-109)||(23090298-23090329)
chr5 (78-109)||(34208538-34208569)
chr5 (77-109)||(3077596-3077628)
[»] chr7 (34 HSPs)
chr7 (78-223)||(17904294-17904440)
chr7 (78-223)||(6387692-6387838)
chr7 (77-223)||(29890825-29890972)
chr7 (77-223)||(26770310-26770457)
chr7 (78-223)||(37179331-37179478)
chr7 (77-223)||(46467334-46467481)
chr7 (84-223)||(29427170-29427310)
chr7 (77-223)||(4405240-4405387)
chr7 (77-223)||(31502652-31502800)
chr7 (77-191)||(6389887-6390002)
chr7 (1-79)||(39801505-39801583)
chr7 (115-213)||(41921892-41921990)
chr7 (77-213)||(9332461-9332599)
chr7 (78-223)||(9876394-9876539)
chr7 (96-223)||(48049133-48049261)
chr7 (77-223)||(9215462-9215608)
chr7 (78-223)||(46689998-46690140)
chr7 (96-223)||(5514910-5515038)
chr7 (96-223)||(12252203-12252331)
chr7 (96-223)||(31858110-31858238)
chr7 (77-223)||(22753067-22753214)
chr7 (98-147)||(19523813-19523862)
chr7 (96-223)||(7839191-7839315)
chr7 (76-109)||(43701549-43701582)
chr7 (77-109)||(29427410-29427442)
chr7 (96-207)||(33974641-33974753)
chr7 (78-109)||(6387938-6387969)
chr7 (78-109)||(17904163-17904194)
chr7 (78-109)||(26770179-26770210)
chr7 (78-109)||(29723383-29723414)
chr7 (78-109)||(29891072-29891103)
chr7 (78-109)||(37179577-37179608)
chr7 (78-109)||(46467581-46467612)
chr7 (77-109)||(4405108-4405140)
[»] chr3 (30 HSPs)
chr3 (77-213)||(29014689-29014826)
chr3 (78-223)||(18997098-18997244)
chr3 (78-223)||(18999637-18999783)
chr3 (78-223)||(32677477-32677623)
chr3 (76-223)||(36737832-36737980)
chr3 (77-223)||(39518538-39518685)
chr3 (77-223)||(41349370-41349517)
chr3 (78-223)||(39528880-39529026)
chr3 (78-221)||(29371538-29371682)
chr3 (78-223)||(1351996-1352142)
chr3 (78-223)||(32840079-32840226)
chr3 (78-223)||(39806979-39807125)
chr3 (92-220)||(28228570-28228701)
chr3 (75-223)||(38855448-38855597)
chr3 (79-223)||(22157389-22157534)
chr3 (79-223)||(21974280-21974425)
chr3 (79-223)||(21996711-21996856)
chr3 (106-192)||(55367714-55367801)
chr3 (96-223)||(49040862-49040990)
chr3 (78-181)||(840746-840849)
chr3 (77-109)||(1352242-1352274)
chr3 (77-109)||(29371784-29371816)
chr3 (78-109)||(18996967-18996998)
chr3 (78-109)||(18999506-18999537)
chr3 (78-109)||(32677723-32677754)
chr3 (78-109)||(39528749-39528780)
chr3 (78-109)||(41349617-41349648)
chr3 (78-109)||(46878981-46879012)
chr3 (77-109)||(55365907-55365939)
chr3 (191-223)||(55366039-55366071)
[»] chr1 (22 HSPs)
chr1 (77-223)||(48564948-48565095)
chr1 (78-223)||(47669250-47669396)
chr1 (79-213)||(1236071-1236206)
chr1 (81-223)||(9831634-9831777)
chr1 (77-223)||(46220390-46220537)
chr1 (77-223)||(10737700-10737847)
chr1 (78-223)||(8889573-8889720)
chr1 (80-223)||(3384597-3384741)
chr1 (78-223)||(4055615-4055761)
chr1 (93-223)||(18126981-18127112)
chr1 (93-223)||(4817400-4817531)
chr1 (78-223)||(39241283-39241429)
chr1 (127-223)||(7414338-7414436)
chr1 (77-205)||(37875726-37875854)
chr1 (122-221)||(26842573-26842673)
chr1 (77-109)||(4055483-4055515)
chr1 (77-109)||(4817268-4817300)
chr1 (77-109)||(47669118-47669150)
chr1 (78-109)||(9831503-9831534)
chr1 (78-109)||(18126851-18126882)
chr1 (78-109)||(33020206-33020237)
chr1 (77-109)||(33023430-33023462)
[»] chr8 (19 HSPs)
chr8 (78-223)||(33837729-33837875)
chr8 (78-223)||(45334276-45334422)
chr8 (78-223)||(2508796-2508942)
chr8 (78-223)||(25106342-25106488)
chr8 (78-223)||(38495472-38495618)
chr8 (78-223)||(9740116-9740263)
chr8 (78-223)||(28379078-28379224)
chr8 (77-209)||(13469507-13469639)
chr8 (93-221)||(2626253-2626382)
chr8 (77-223)||(32183480-32183627)
chr8 (93-223)||(27793059-27793188)
chr8 (77-109)||(9739984-9740016)
chr8 (77-109)||(27024432-27024464)
chr8 (77-109)||(27027657-27027689)
chr8 (77-109)||(33837975-33838007)
chr8 (78-109)||(2509042-2509073)
chr8 (78-109)||(45334522-45334553)
chr8 (77-109)||(25106210-25106242)
chr8 (77-109)||(25979005-25979037)
[»] chr4 (17 HSPs)
chr4 (81-223)||(8955779-8955922)
chr4 (84-223)||(36971179-36971319)
chr4 (78-223)||(45590873-45591019)
chr4 (95-223)||(33288421-33288551)
chr4 (78-207)||(30469213-30469343)
chr4 (79-213)||(39482003-39482138)
chr4 (93-219)||(50774073-50774200)
chr4 (78-223)||(34334463-34334613)
chr4 (77-223)||(18835838-18835985)
chr4 (77-193)||(49162249-49162366)
chr4 (76-223)||(26025526-26025674)
chr4 (75-109)||(36016276-36016310)
chr4 (77-109)||(19256185-19256217)
chr4 (78-109)||(19257106-19257137)
chr4 (77-109)||(8956022-8956054)
chr4 (77-109)||(30469414-30469446)
chr4 (77-109)||(45590741-45590773)
[»] chr2 (13 HSPs)
chr2 (78-223)||(15233886-15234032)
chr2 (78-223)||(41252546-41252693)
chr2 (82-223)||(35792911-35793053)
chr2 (78-223)||(43040849-43040995)
chr2 (78-211)||(44104546-44104681)
chr2 (93-223)||(41643025-41643156)
chr2 (78-223)||(21727803-21727949)
chr2 (97-223)||(31903400-31903526)
chr2 (158-223)||(31296214-31296278)
chr2 (77-109)||(10112338-10112370)
chr2 (77-109)||(43041095-43041127)
chr2 (75-109)||(35793152-35793186)
chr2 (77-109)||(41252414-41252446)
[»] scaffold0103 (1 HSPs)
scaffold0103 (77-223)||(44751-44896)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 223
Target Start/End: Complemental strand, 2543360 - 2543212
Alignment:
Q  76 catactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat 175  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||    
T  2543360 catactccctccattcgttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaacatctgtgtgttttttacttaaat 2543261  T
Q  176 gtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||| || ||||||||||||||||||||||||||||||||||||||||||    
T  2543260 gtctttatttatcattaaattcacatgtgataaaccaaatgtcacaact 2543212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 75 - 223
Target Start/End: Original strand, 27312111 - 27312262
Alignment:
Q  75 tcatactccctccattccttttcttttgatgttttggctctt-gacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttactta 172  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||| ||| || | |||| |||||||||||    
T  27312111 tcatactccctccattccttttcttttgatgttttagctcttagacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttttactta 27312210  T
Q  173 aatgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  27312211 aatgtccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 27312262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 32274711 - 32274565
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  32274711 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 32274612  T
Q  178 cc-tttttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    || | |||||||||||| |||||| |||||||||||| |||||||||    
T  32274611 ccgtatttatcattaaagtcacatatgataaaccaaaggtcacaact 32274565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 7156236 - 7156381
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||| |||||| || |||| ||||||||||||| |||||||| |||||||||||| | ||||||||||||| ||| || | ||||| ||| ||| ||||     
T  7156236 ataccccctccgtttctttgcttttgatgttttagctcttgatacaagttttaaggaataattaaagtatataaatatttgtgtgtctttgactaaaata 7156335  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaa 221  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  7156336 tccttatttatcattaaattcacatgtgataaaccaaatgtcacaa 7156381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 29452542 - 29452688
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    ||||||||| |||  |||||||||||||||||  |||||| ||||||||||||| ||||||||||||||| ||| || | ||||||||| ||| ||| ||    
T  29452542 tactccctctatttattttcttttgatgttttaactcttggcacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttgactaaaaagt 29452641  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | || ||||||||||||||||||||||||||| |||| |||||||||    
T  29452642 cattatttatcattaaattcacatgtgataaatcaaaggtcacaact 29452688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 31170988 - 31171136
Alignment:
Q  76 catactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat 175  Q
    ||||||||||||||| ||||||||||||| |||| | ||||  ||||| ||||||| ||||||||||||||| ||| || | ||| ||||| | | ||||    
T  31170988 catactccctccatttcttttcttttgatattttagttcttagcacaaattttaaggagtaattaaagtatataaatatttgtgtatttttgattaaaat 31171087  T
Q  176 gtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  31171088 atccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 31171136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 178
Target Start/End: Complemental strand, 5008409 - 5008308
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||| | ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||| ||| || | |||||||||||||||||||    
T  5008409 atactcctttcattccttttcttttgatgttttagctcttaacacaagttttaaggagtaattaaagtatataaatatttgtgtgttttttacttaaatg 5008310  T
Q  177 tc 178  Q
    ||    
T  5008309 tc 5008308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 78 - 142
Target Start/End: Original strand, 8504733 - 8504797
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaa 142  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  8504733 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaa 8504797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 18742223 - 18742078
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    ||||||||||||| ||||||||||||||||||  |||||| ||||||| ||||| | ||||||| ||||| ||| || | |||| |||| ||| |||| |    
T  18742223 tactccctccatttcttttcttttgatgttttacctcttggcacaagtcttaaggaataattaatgtataaaaatatttgtgtg-ttttgactaaaatat 18742125  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| | ||||| ||||||| ||||| |||| ||||| |||| ||||    
T  18742124 ccttatatatcaataaattctcatgtcataagccaaaagtcataact 18742078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 32274431 - 32274465
Alignment:
Q  75 tcatactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||||    
T  32274431 tcatactccctccattccttttcttttgatgtttt 32274465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Original strand, 8504796 - 8504848
Alignment:
Q  172 aaatgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||| ||||||||||||||||||| | |||||||||| |||||||||    
T  8504796 aaatgtccttatttatcattaaattcacatataataaaccaaaggtcacaact 8504848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 27312394 - 27312362
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  27312394 atactccctccattccttttcttttgatgtttt 27312362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 29302548 - 29302517
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  29302548 tactccctccattccttttcttttgatgtttt 29302517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 7156504 - 7156471
Alignment:
Q  76 catactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||| ||||||||||||||||||    
T  7156504 catactccctccatttcttttcttttgatgtttt 7156471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 12174699 - 12174731
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||| |||||||    
T  12174699 atactccctccattccttttcttttaatgtttt 12174731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 29875232 - 29875085
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||    
T  29875232 atactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatg 29875133  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  29875132 tccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 29875085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 12398946 - 12399092
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  12398946 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 12399045  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||| |||||||||||||||||||||||||||||||| |||||||||    
T  12399046 tcttatttatcattaaattcacatgtgataaaccaaaggtcacaact 12399092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 23090576 - 23090429
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||    
T  23090576 atactccctccattccttttcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatacaaacatttgtgtattttttacttaaatg 23090477  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | ||| ||||||||||||||||||| |||||||||||| |||||||||    
T  23090476 ttcttatttatcattaaattcacatatgataaaccaaaggtcacaact 23090429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 4695162 - 4695308
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  4695162 tactccctccatttcttttcttttgatgttatagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 4695261  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4695262 ccttatttattattaaattcacatgtgataaaccaaatgtcacaact 4695308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 34208816 - 34208669
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||| |||||||||||||||    
T  34208816 atactccctccattcctttttttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatg 34208717  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||||||| |||||||||||| |||||||||    
T  34208716 tccttatttatcattaaattcacatatgataaaccaaaggtcacaact 34208669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 4145965 - 4145825
Alignment:
Q  84 ctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-t 182  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||| ||| || | ||| |||||||||||||||||||| |    
T  4145965 ctccattccttttcttttgatgttttagttcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttat 4145866  T
Q  183 ttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  4145865 ttatcattaaattcacatgtgataaaccaaaggtcacaact 4145825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 42757805 - 42757949
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | | |||| |||||||||||||||    
T  42757805 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacgt-tgtgtg-tttttacttaaatgt 42757902  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
      || ||||||||||||||||||||||||||||||||||||| ||||    
T  42757903 ttttatttatcattaaattcacatgtgataaaccaaatgtcataact 42757949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 22645909 - 22646055
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    ||||||||| ||| |||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||||| ||| || | ||||||||||||| |||| |    
T  22645909 tactccctcaatttcttttcttttaatgttttagctcttggcacaagttttaaggagtaattaaagtatataaatatttgtgtgttttttactaaaatat 22646008  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| ||||||||||||||||||||||||||| |||| |||||||||    
T  22646009 ccttatttatcattaaattcacatgtgataaatcaaaagtcacaact 22646055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 3077859 - 3077728
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcatta 191  Q
    |||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||| |||||||||||||||||||| ||||||||||    
T  3077859 ttttttttttatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttatttatcatta 3077760  T
Q  192 aattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||| ||||||||||| |||||||||||||    
T  3077759 aattcatatgtgataaacaaaatgtcacaact 3077728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 19574943 - 19574894
Alignment:
Q  98 ttttgatgttttggctcttgacacaagttttaagaagtaattaaagtata 147  Q
    ||||||||||||  |||||| ||||||| |||||||||||||||||||||    
T  19574943 ttttgatgttttaactcttggcacaagtcttaagaagtaattaaagtata 19574894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 41610372 - 41610404
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  41610372 atactccctccattccttttcttttgatgtttt 41610404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 42793596 - 42793564
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  42793596 atactccctccattccttttcttttgatgtttt 42793564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 12399223 - 12399192
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  12399223 tactccctccattccttttcttttgatgtttt 12399192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 23090298 - 23090329
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  23090298 tactccctccattccttttcttttgatgtttt 23090329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 34208538 - 34208569
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  34208538 tactccctccattccttttcttttgatgtttt 34208569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 3077596 - 3077628
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||| |||||||||||||||||    
T  3077596 atactccctccattcattttcttttgatgtttt 3077628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 17904440 - 17904294
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  17904440 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 17904341  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  17904340 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 17904294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 6387692 - 6387838
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  6387692 tacttcctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 6387791  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  6387792 ccttatttatcattaaattcacatgtgataaaccaaatgtcacaact 6387838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 29890825 - 29890972
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||  | |||||||||||||||||||    
T  29890825 atactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttacttaaatg 29890924  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  29890925 tccttatttatcattaaattcacatgtgataaaccaaaagtcacaact 29890972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 26770457 - 26770310
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||| |||||||||||||||||   ||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||     
T  26770457 atactccctccattcattttcttttgatgttttaattcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaata 26770358  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  26770357 tccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 26770310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 37179331 - 37179478
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttacttaaatg 176  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||| | |||| | |||| |||||||||||||||    
T  37179331 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaatgaaagtatatagacatttgtgtgtttttttacttaaatg 37179430  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  37179431 tccttgtttatcattaaattcacatgtgataaaccaaaggtcacaact 37179478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 46467334 - 46467481
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||||| ||||||||||||||| |||||| | |||||||||||||||||||    
T  46467334 atactccctccattccttttcttttgatgttttaactcttgacacaaattttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatg 46467433  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | ||| |||||||||||||||||||||||||||||||| ||| |||||    
T  46467434 ttcttatttatcattaaattcacatgtgataaaccaaaggtcgcaact 46467481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 84 - 223
Target Start/End: Original strand, 29427170 - 29427310
Alignment:
Q  84 ctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-t 182  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||| || |    
T  29427170 ctccattcattttcttttgatgttttacctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtctttat 29427269  T
Q  183 ttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||||||||||||||||||||||  ||||||||    
T  29427270 ttatcattaaattcacatgtgataaaccaaagatcacaact 29427310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 4405387 - 4405240
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |||| ||| || | |||| |||||||| |||||    
T  4405387 atactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatg 4405288  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  4405287 tccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 4405240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 31502652 - 31502800
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg--ttttttacttaaa 174  Q
    ||||||||||||||| ||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||| |||||| | ||||  |||||||||||||    
T  31502652 atactccctccattc-ttttcttttgatgttttagctcttgatgcaagttttaaggagtaattaaagtatataaacatttgtgtgttttttttacttaaa 31502750  T
Q  175 tgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||| |||||||||||||||||||||||||| ||||| |||||||||    
T  31502751 tgtccttatttatcattaaattcacatgtgataagccaaaagtcacaact 31502800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 77 - 191
Target Start/End: Complemental strand, 6390002 - 6389887
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||| |||| |||||||||||||||||  ||||||||||||||||||||||||| |||||||||| ||| || | |||||||||||||||||||    
T  6390002 atactccctcaattctttttcttttgatgttttaactcttgacacaagttttaagaagtagttaaagtatataaatatttgtgtgttttttacttaaatg 6389903  T
Q  177 tcctt-tttatcatta 191  Q
    ||||| ||||||||||    
T  6389902 tccttatttatcatta 6389887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 39801505 - 39801583
Alignment:
Q  1 tttgggctattaggttagcaggtggttggaatataatagaagtagaattatatctcaaattctcaatggttaggtcata 79  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39801505 tttgggctattaggttagcaagtggttggaatataatagaagtagaattatatctcaaattctcaatggttagggcata 39801583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 115 - 213
Target Start/End: Original strand, 41921892 - 41921990
Alignment:
Q  115 ttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaattcacatgtgataaaccaaa 213  Q
    ||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41921892 ttgacacaagttttaaggagtaattaaagtatataaacatttgtgt-ttttttacttaaatgtccttatttatcattaaattcacatgtgataaaccaaa 41921990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 77 - 213
Target Start/End: Complemental strand, 9332599 - 9332461
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgt-gttttttacttaaat 175  Q
    |||||||||||||| ||||||||||||| |||| |||||| |||||||||||||| ||||||||||||||| ||| || | |||  ||||||||| ||||    
T  9332599 atactccctccatttcttttcttttgatattttagctcttaacacaagttttaaggagtaattaaagtatataaatatttgtgtatttttttactaaaat 9332500  T
Q  176 gtcctt-tttatcattaaattcacatgtgataaaccaaa 213  Q
    |||||| ||||  ||||||||||||||||||||| ||||    
T  9332499 gtccttatttagtattaaattcacatgtgataaatcaaa 9332461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 9876539 - 9876394
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||| ||||||||| |||| |||| ||||||| ||| ||| || |||||||||| |||||||||| |||| ||| || | |||| |||||||| ||||||    
T  9876539 tacttcctccattctttttttttt-atgttttagctattggcataagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatgt 9876441  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  9876440 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 9876394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 48049261 - 48049133
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    |||||||||||||| ||||||| ||||||| ||||| ||||||||||||||| ||| || | | ||||||| ||| |||||||||| ||||| |||||||    
T  48049261 tcttttgatgttttagctcttggcacaagtcttaagtagtaattaaagtatagaaatatttgtatgtttttgactaaaatgtccttatttatgattaaat 48049162  T
Q  195 tcacatgtgataaaccaaatgtcacaact 223  Q
    | ||||||||||| ||||| |||||||||    
T  48049161 ttacatgtgataagccaaaggtcacaact 48049133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 9215462 - 9215608
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||| |||  || |||||||||||||| |||||||  |||| | ||||||||||||||||||| | ||| || | | ||||||  ||| |||||    
T  9215462 atactccctctattttttatcttttgatgttttagctcttggtacaaatcttaagaagtaattaaagtacataaatatttgtatgttttggactaaaatg 9215561  T
Q  177 tcctttttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  9215562 tccttattataattaaattcacatgtgataaatcaaaggtcacaact 9215608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 46690140 - 46689998
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||  || |||||||||||||| ||||||| ||||| | ||||| ||||||||||||||| ||| || | | ||||||  ||| ||||||    
T  46690140 tactccctccattttttatcttttgatgttttagctcttggcacaaatcttaaggagtaattaaagtatataaatatttgtatgttttggactaaaatgt 46690041  T
Q  178 cctttttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |    |||| |||||||||||||||||||| |||||||||||||||    
T  46690040 c---attataattaaattcacatgtgataagccaaatgtcacaact 46689998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 5515038 - 5514910
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    ||||||||||| || ||||||||||||||| ||||  | |||||||| |||| ||| || | | |||||| |||| |||||| ||| ||||| |||||||    
T  5515038 tcttttgatgtattagctcttgacacaagtcttaatgaataattaaaatataaaaatatttgtatgttttgtactaaaatgttcttatttatgattaaat 5514939  T
Q  195 tcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||||| |||| |||||||||    
T  5514938 tcacatgtgataaatcaaaggtcacaact 5514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 12252331 - 12252203
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    ||||||||||||||  | |||| ||||||| ||||| ||||||||| ||||| ||| || | | ||||||  ||| |||||||||| ||||| |||||||    
T  12252331 tcttttgatgttttaacacttggcacaagtcttaaggagtaattaatgtatagaaatatttgtatgttttggactaaaatgtccttatttatgattaaat 12252232  T
Q  195 tcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||||||| ||||| |||| ||||    
T  12252231 tcacatgtgataagccaaaagtcataact 12252203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 31858110 - 31858238
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    ||||||||||||||  |||||||||||| | ||||| ||||||||||| ||| |||||| | | ||||||| | | |||| ||||| ||||| |||||||    
T  31858110 tcttttgatgttttaactcttgacacaaatcttaaggagtaattaaagaatataaacatttgtatgtttttgattaaaatatccttatttatgattaaat 31858209  T
Q  195 tcacatgtgataaaccaaatgtcacaact 223  Q
    | |||||||||||  |||| |||||||||    
T  31858210 ttacatgtgataagtcaaaggtcacaact 31858238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 22753067 - 22753214
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||| ||| | |||||||||||| | ||| ||||||||| ||||  ||||||| ||| ||| ||| || |   ||||||  ||| |||||    
T  22753067 atactccctccatttcttatattttgatgttttagttctggacacaagtcttaatgagtaattgaagcataaaaatatttgaatgttttggactaaaatg 22753166  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    || || ||||||||||||||||||||||||||  |||| |||||||||    
T  22753167 tctttatttatcattaaattcacatgtgataagtcaaaggtcacaact 22753214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 19523813 - 19523862
Alignment:
Q  98 ttttgatgttttggctcttgacacaagttttaagaagtaattaaagtata 147  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  19523813 ttttgatgttttagctcttgacacaagttttaaggagtaattaaagtata 19523862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 223
Target Start/End: Complemental strand, 7839315 - 7839191
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctttttatcattaaatt 195  Q
    ||||||||| |||| ||| ||  ||||||| ||||| ||||||||||||||| ||| || | | ||||||  | | ||||||    ||||| ||||||||    
T  7839315 tcttttgatattttagctgttatcacaagtattaaggagtaattaaagtatataaatatttgtatgttttgaaataaaatgta---tttatgattaaatt 7839219  T
Q  196 cacatgtgataaaccaaatgtcacaact 223  Q
    ||||||| ||||||||||||||||||||    
T  7839218 cacatgtaataaaccaaatgtcacaact 7839191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 109
Target Start/End: Original strand, 43701549 - 43701582
Alignment:
Q  76 catactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||||    
T  43701549 catactccctccattccttttcttttgatgtttt 43701582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 29427442 - 29427410
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  29427442 atactccctccattccttttcttttgatgtttt 29427410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 207
Target Start/End: Complemental strand, 33974753 - 33974641
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    |||||||| ||||| ||||||| ||||||| ||||| ||||||||||||||| ||| ||   | ||| ||  ||| |||| ||||| ||||| ||||||     
T  33974753 tcttttgacgttttagctcttggcacaagtcttaaggagtaattaaagtatagaaatattggtatgtattggactaaaatatccttatttatgattaaac 33974654  T
Q  195 tcacatgtgataa 207  Q
    |||||||||||||    
T  33974653 tcacatgtgataa 33974641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 6387969 - 6387938
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  6387969 tactccctccattccttttcttttgatgtttt 6387938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 17904163 - 17904194
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  17904163 tactccctccattccttttcttttgatgtttt 17904194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 26770179 - 26770210
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  26770179 tactccctccattccttttcttttgatgtttt 26770210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 29723414 - 29723383
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  29723414 tactccctccattccttttcttttgatgtttt 29723383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 29891103 - 29891072
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  29891103 tactccctccattccttttcttttgatgtttt 29891072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 37179608 - 37179577
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  37179608 tactccctccattccttttcttttgatgtttt 37179577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 46467612 - 46467581
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  46467612 tactccctccattccttttcttttgatgtttt 46467581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4405108 - 4405140
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||| ||||||||||||||||||    
T  4405108 atactccctccatttcttttcttttgatgtttt 4405140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 6e-58; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 29014689 - 29014826
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  29014689 atactccctccattccttttcttttgatgttttagctcttgacacaagttttaagaagtaattaaagtatataaacatttgtgtgttttttacttaaatg 29014788  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaa 213  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  29014789 tccttatttatcattaaattcacatgtgataaaccaaa 29014826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 18997244 - 18997098
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | || |||||||||||||||||    
T  18997244 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgcgttttttacttaaatgt 18997145  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  18997144 ccttatttatcattaaattcacatgtgataaaccaaaagtcacaact 18997098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 18999783 - 18999637
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | || |||||||||||||||||    
T  18999783 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgcgttttttacttaaatgt 18999684  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  18999683 ccttatttatcattaaattcacatgtgataaaccaaaagtcacaact 18999637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 32677477 - 32677623
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  32677477 tactccctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 32677576  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  32677577 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 32677623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 36737832 - 36737980
Alignment:
Q  76 catactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat 175  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||| |||||| | ||||||||||||||||||    
T  36737832 catactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggaataattaaagtatataaacatttgtgtgttttttacttaaat 36737931  T
Q  176 gtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  36737932 atccttatttatcattaaattcacatgtgataaatcaaatgtcacaact 36737980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 39518685 - 39518538
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||| |||||| | |||||||||||||||||||    
T  39518685 atactccctccattccttttcttttgatgttttagctcttgacacaagttttaatgagtaattaaagtatataaacatttgtgtgttttttacttaaatg 39518586  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||||||||||||||| ||||||||| ||||    
T  39518585 tccttatttatcattaaattcacatgtgataaatcaaatgtcataact 39518538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 41349370 - 41349517
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||||    
T  41349370 atactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatg 41349469  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  41349470 tccttatttatcattaaattcacatgtgataaatcaaaggtcacaact 41349517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 39529026 - 39528880
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  39529026 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 39528927  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  39528926 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 39528880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 29371538 - 29371682
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  29371538 tactccctccattcattttcttttgatgttttagctcttgacacaaattttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 29371637  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaa 221  Q
    |||| |||||||||||||||||||||||||||||||| |||||||    
T  29371638 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaa 29371682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 1351996 - 1352142
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||| ||||||||||||||||    
T  1351996 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgt 1352095  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||| ||| |||||||||    
T  1352096 ccttatttatcattaaattcacatgtgataaactaaaggtcacaact 1352142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 32840226 - 32840079
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttacttaaatg 176  Q
    |||||||||||||| |||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||| | |||| |||||||||||||||    
T  32840226 tactccctccattcattttcttttgatattttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaatg 32840127  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  32840126 ttcttatttatcattaaattcacatgtgataaaccaaatgtcacaact 32840079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 39806979 - 39807125
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||| ||||||||||||||||    
T  39806979 tactcccttcattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgt 39807078  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||| |||||||||||||||||||||||||||||||| |||||||||    
T  39807079 tcttatttatcattaaattcacatgtgataaaccaaaggtcacaact 39807125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 28228701 - 28228570
Alignment:
Q  92 cttttcttttgatgttttggctcttgacacaagttttaagaagtaatta---aagtatacaaacatatatgtgttttttacttaaatgtcctttttatca 188  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||   ||||||| |||||| | ||||||||||||||||||| | |||||||||    
T  28228701 ctttttttttgatgttttggctcttgacacaagttttaagaagtaattattaaagtatataaacatttgtgtgttttttacttaaatgccatttttatca 28228602  T
Q  189 ttaaattcacatgtgataaaccaaatgtcaca 220  Q
    ||||||||||||||||||||||||||||||||    
T  28228601 ttaaattcacatgtgataaaccaaatgtcaca 28228570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 75 - 223
Target Start/End: Complemental strand, 38855597 - 38855448
Alignment:
Q  75 tcatactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaa 174  Q
    ||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |||| ||| || | |||| |||||||| |||    
T  38855597 tcatactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaa 38855498  T
Q  175 tgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  38855497 tgtccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 38855448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 22157534 - 22157389
Alignment:
Q  79 actccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtc 178  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | | | ||||| ||| |||||||    
T  22157534 actccctccatttattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatgtc 22157435  T
Q  179 ctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||| ||||  |||||||||||||||||||||||||| |||||||||    
T  22157434 cttatttagtattaaattcacatgtgataaaccaaaggtcacaact 22157389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 21974425 - 21974280
Alignment:
Q  79 actccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtc 178  Q
    ||||||||||||  |||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| || | | | ||||| ||| |||| ||    
T  21974425 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatatc 21974326  T
Q  179 ctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||| ||||  |||||||||||||||||||||||||| |||||||||    
T  21974325 cttatttagtattaaattcacatgtgataaaccaaaggtcacaact 21974280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 223
Target Start/End: Complemental strand, 21996856 - 21996711
Alignment:
Q  79 actccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtc 178  Q
    ||||||||||||  |||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| || | | | ||||| ||| |||| ||    
T  21996856 actccctccatttattttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtctatttttgactaaaatatc 21996757  T
Q  179 ctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||| ||||  |||||||||||||||||||||||||| |||||||||    
T  21996756 cttatttagtattaaattcacatgtgataaaccaaaggtcacaact 21996711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 55367801 - 55367714
Alignment:
Q  106 ttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaa 192  Q
    |||| |||||||| |||||||||||| ||||||||||||||| ||| || | ||| |||||||||||||||||||| |||||||||||    
T  55367801 ttttagctcttgatacaagttttaaggagtaattaaagtatataaatatttgtgtattttttacttaaatgtccttatttatcattaa 55367714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 49040862 - 49040990
Alignment:
Q  96 tcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaat 194  Q
    |||||||||||||| |||| || ||||||| || || |||||||||  |||| ||| || | | ||||||  ||| |||||||||| ||||| |||||||    
T  49040862 tcttttgatgttttagctcctggcacaagtcttgaggagtaattaagttatagaaatatttgtatgttttagactaaaatgtccttgtttatgattaaat 49040961  T
Q  195 tcacatgtgataaaccaaatgtcacaact 223  Q
    |||||| |||||||||||| ||| |||||    
T  49040962 tcacatttgataaaccaaaggtcccaact 49040990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 181
Target Start/End: Complemental strand, 840849 - 840746
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||  || ||||||||||||||  |||||| ||||||| ||||||| ||||||||||||| ||| || | | ||||||  ||| ||||||    
T  840849 tactccctccattttttatcttttgatgttttaactcttggcacaagtcttaagaaataattaaagtatagaaaaatttgtatgttttggactaaaatgt 840750  T
Q  178 cctt 181  Q
    ||||    
T  840749 cctt 840746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 1352274 - 1352242
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  1352274 atactccctccattccttttcttttgatgtttt 1352242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 29371816 - 29371784
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  29371816 atactccctccattccttttcttttgatgtttt 29371784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 18996967 - 18996998
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  18996967 tactccctccattccttttcttttgatgtttt 18996998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 18999506 - 18999537
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  18999506 tactccctccattccttttcttttgatgtttt 18999537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 32677754 - 32677723
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  32677754 tactccctccattccttttcttttgatgtttt 32677723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 39528749 - 39528780
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  39528749 tactccctccattccttttcttttgatgtttt 39528780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 41349648 - 41349617
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  41349648 tactccctccattccttttcttttgatgtttt 41349617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 46879012 - 46878981
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  46879012 tactccctccattccttttcttttgatgtttt 46878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 55365907 - 55365939
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||| |||||||||||||||||||||||    
T  55365907 atactcccttcattccttttcttttgatgtttt 55365939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 55366071 - 55366039
Alignment:
Q  191 aaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||||||||||||||||| |||||||||    
T  55366071 aaattcacatgtgataaaccaaaggtcacaact 55366039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 48565095 - 48564948
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||  | |||||||||||||||||||    
T  48565095 atactccctccattccttttcttttgatgttttggcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttacttaaatg 48564996  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  48564995 tccttatttatcattaaattcacatgtgataaaccaaaagtcacaact 48564948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 47669396 - 47669250
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  47669396 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 47669297  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  47669296 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 47669250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 79 - 213
Target Start/End: Original strand, 1236071 - 1236206
Alignment:
Q  79 actccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtc 178  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||    
T  1236071 actccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtc 1236170  T
Q  179 ctt-tttatcattaaattcacatgtgataaaccaaa 213  Q
    ||| ||||||||||||||||||||||||||| ||||    
T  1236171 cttatttatcattaaattcacatgtgataaatcaaa 1236206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 81 - 223
Target Start/End: Complemental strand, 9831777 - 9831634
Alignment:
Q  81 tccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcct 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||||| ||    
T  9831777 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgttct 9831678  T
Q  181 t-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | |||||||||||||||||||||||||||||||| |||||||||    
T  9831677 tatttatcattaaattcacatgtgataaaccaaaggtcacaact 9831634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 46220537 - 46220390
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||| ||    
T  46220537 atactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaattg 46220438  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||||||    
T  46220437 tccttatttatcattaaattcacatgtgataaactaaaggtcacaact 46220390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 10737700 - 10737847
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || |||||||||||| ||| || | |||||||||||||||||||    
T  10737700 atactccctccattccttttcttttgatgttttagctcttgatacaagttttaaggagcaattaaagtatataaatatttgtgtgttttttacttaaatg 10737799  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||||    
T  10737800 tccttatttatcattaaattcagatgtgataaaccaaaggtcacaact 10737847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 8889720 - 8889573
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttacttaaatg 176  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | |||| | |||| |||||||||||||||    
T  8889720 tactccctccattccttttattttgatgttttagctcttgacacaagttttaagaagtaattaaagtatatatacatttgtgtgtttttttacttaaatg 8889621  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    || || |||||||||||||||||||||||||||| ||| |||||||||    
T  8889620 tcattatttatcattaaattcacatgtgataaactaaaagtcacaact 8889573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 3384597 - 3384741
Alignment:
Q  80 ctccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcc 179  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||| | | ||||||||||||||||||||      
T  3384597 ctccctccattctttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacgtttgtgtgttttttacttaaatgttt 3384696  T
Q  180 tt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    || ||||||||||||||||||||||||||| |||| |||||||||    
T  3384697 ttatttatcattaaattcacatgtgataaatcaaaggtcacaact 3384741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 4055761 - 4055615
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||| | ||| |||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| || | ||||||||| ||||||||||    
T  4055761 tactcccttcgttctttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtgtttttcacttaaatgt 4055662  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | || ||||||||||||||||||||||||||||||||||| ||||||    
T  4055661 ctttatttatcattaaattcacatgtgataaaccaaatgttacaact 4055615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 18127112 - 18126981
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat-gtcctttttatcatta 191  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||||| ||||||||||||  || ||||||||||||    
T  18127112 tttttttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtgttttacttaaatattcttttttatcatta 18127013  T
Q  192 aattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||||||||||||| |||||||||    
T  18127012 aattcacatgtgataaaccaaaagtcacaact 18126981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 4817531 - 4817400
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcatta 191  Q
    |||| |||| |||||||  |||||||||||||||||||| ||||||||||||||| |||||| | ||||| |||||||||||||||||| ||||||||||    
T  4817531 ttttttttttatgttttaactcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtgttttacttaaatgtccttatttatcatta 4817432  T
Q  192 aattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||||||||| |||| ||||||||    
T  4817431 aattcacatgtgataaactaaatatcacaact 4817400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 39241429 - 39241283
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    ||||| ||||||| |||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||| || | ||||||||| ||  |||| |    
T  39241429 tactctctccatttcttttcttttgatgttttagctcttgacataaattttaagaagtaattaaagtatataaatatttgtgtgtttttgaccaaaatat 39241330  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||| ||||||||||||||||||||||||||| |||| |||||||||    
T  39241329 tcttatttatcattaaattcacatgtgataaatcaaaagtcacaact 39241283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 223
Target Start/End: Complemental strand, 7414436 - 7414338
Alignment:
Q  127 ttaagaagtaattaaagtatacaaacatatatgtgtttttt-acttaaatgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||| ||| || | |||||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  7414436 ttaaggagtaattaaagtatataaatatttgtgtgtttttttacttaaatatccttatttatcattaaattcacatatgataaaccaaatgtcacaact 7414338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 37875726 - 37875854
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||| | ||||||| ||||| ||| || | | || |||| ||| ||||     
T  37875726 atactccctccatttcttttcttttgatgttttagctcttggcacaagtcttaaggaataattaatgtatagaaatatttgtatg-ttttgactaaaata 37875824  T
Q  177 tcctt-tttatcattaaattcacatgtgat 205  Q
    ||||| ||||||||||||||||||| ||||    
T  37875825 tccttatttatcattaaattcacatttgat 37875854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Complemental strand, 26842673 - 26842573
Alignment:
Q  122 aagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcaca 220  Q
    |||| ||||| ||||||||||||||| ||| || ||| ||||||  ||| |||| ||||| ||||| ||||||||||||||||||||  |||||||||||    
T  26842673 aagtcttaaggagtaattaaagtatagaaatatgtatatgttttagactaaaatatccttatttatgattaaattcacatgtgataagtcaaatgtcaca 26842574  T
Q  221 a 221  Q
    |    
T  26842573 a 26842573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4055483 - 4055515
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  4055483 atactccctccattccttttcttttgatgtttt 4055515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 4817268 - 4817300
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  4817268 atactccctccattccttttcttttgatgtttt 4817300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 47669118 - 47669150
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  47669118 atactccctccattccttttcttttgatgtttt 47669150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 9831503 - 9831534
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  9831503 tactccctccattccttttcttttgatgtttt 9831534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 18126851 - 18126882
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  18126851 tactccctccattccttttcttttgatgtttt 18126882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Original strand, 33020206 - 33020237
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  33020206 tactccctccattccttttcttttgatgtttt 33020237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 33023462 - 33023430
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||| |||||    
T  33023462 atactccctccattccttttcttttgacgtttt 33023430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 33837729 - 33837875
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  33837729 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 33837828  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  33837829 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 33837875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 45334276 - 45334422
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  45334276 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 45334375  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  45334376 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 45334422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 2508796 - 2508942
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||| || ||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| ||||||||||||||||    
T  2508796 tactccatcaatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgt 2508895  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  2508896 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 2508942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 25106488 - 25106342
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||  | ||||||||||| |||||| |    
T  25106488 tactccctccattccttttcttttgatgttttagcttttgacacaagttttaaggagtaattaaagtatataaacacttgtgtgttttttatttaaattt 25106389  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  25106388 ccttatttatcattaaattcacatgtgataaaccaaaagtcacaact 25106342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 38495472 - 38495618
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| |||| |||||| | |||||||||||||||||| |    
T  38495472 tactccctccattcattttcttttgatgttttagctcttgacataagttttaaggagtaattaaaatatataaacatttgtgtgttttttacttaaatat 38495571  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||    
T  38495572 ccttatttatcattaaattcacatgtgataaaccaaatgtcataact 38495618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 9740263 - 9740116
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatg-tgttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||| | ||||||||||||||| |||||| | || | |||||||||||||||    
T  9740263 tactccctccattccttttcttttgatgttttaactcttgacacaagttttagggagtaattaaagtatataaacatttgtgtttttttttacttaaatg 9740164  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    || || ||||||||||||||||||||||||||||||||||||||||||    
T  9740163 tcattatttatcattaaattcacatgtgataaaccaaatgtcacaact 9740116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 28379224 - 28379078
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |||||| | || |||||||||||||||||    
T  28379224 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtgattaaagtatataaacatttgtgcgttttttacttaaatgt 28379125  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||| ||||||||||||| |||||| |||| |||||||||    
T  28379124 ccttatttatccttaaattcacatgcgataaatcaaaggtcacaact 28379078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 13469507 - 13469639
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||| |||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||| ||| || | |||| ||||| ||||||||    
T  13469507 atactccttccattccttttcttttgatgttttaactcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtg-tttttccttaaatg 13469605  T
Q  177 tcctt-tttatcattaaattcacatgtgataaac 209  Q
    ||||| ||||||||||||||||||||||||||||    
T  13469606 tccttatttatcattaaattcacatgtgataaac 13469639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 2626253 - 2626382
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcatta 191  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | |||| |||||| |||||||||||| ||||||||||    
T  2626253 ttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtg-tttttatttaaatgtccttatttatcatta 2626351  T
Q  192 aa-ttcacatgtgataaaccaaatgtcacaa 221  Q
    || |||||||||||||||||||| |||||||    
T  2626352 aatttcacatgtgataaaccaaaggtcacaa 2626382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 32183480 - 32183627
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||||||||||  || |||||||||||||| ||||||| ||||||| ||||| ||||||||||| ||| ||| || | | ||||||  ||| |||||    
T  32183480 atactccctccattttttatcttttgatgttttagctcttggcacaagtcttaaggagtaattaaagcatagaaatatttgtatgttttggactaaaatg 32183579  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||| |||||    
T  32183580 tccttatttatgattaaattcacatgtgataagccaaaggtcgcaact 32183627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 93 - 223
Target Start/End: Original strand, 27793059 - 27793188
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcatta 191  Q
    |||| |||| |||||||  |||| |||| |||||||||| | ||||||| ||||| || ||| | ||| ||||| | |||||| ||||| ||||||||||    
T  27793059 ttttttttttatgttttacctctggacataagttttaaggaataattaatgtatataa-catttgtgtattttt-atttaaatatccttatttatcatta 27793156  T
Q  192 aattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||    
T  27793157 aatttacatgtgataaaccaaatgtcacaact 27793188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 9739984 - 9740016
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  9739984 atactccctccattccttttcttttgatgtttt 9740016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 27024432 - 27024464
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  27024432 atactccctccattccttttcttttgatgtttt 27024464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 27027689 - 27027657
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  27027689 atactccctccattccttttcttttgatgtttt 27027657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 33838007 - 33837975
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  33838007 atactccctccattccttttcttttgatgtttt 33837975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 2509073 - 2509042
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  2509073 tactccctccattccttttcttttgatgtttt 2509042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 45334553 - 45334522
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  45334553 tactccctccattccttttcttttgatgtttt 45334522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 25106210 - 25106242
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||| ||||||||||||||||||||||||||    
T  25106210 atactctctccattccttttcttttgatgtttt 25106242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 25979037 - 25979005
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||| ||||||||||||||||||    
T  25979037 atactccctccatttcttttcttttgatgtttt 25979005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 81 - 223
Target Start/End: Original strand, 8955779 - 8955922
Alignment:
Q  81 tccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcct 180  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||| |||||||||||||||||||    
T  8955779 tccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtattttttacttaaatgtcct 8955878  T
Q  181 t-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    | |||||||||||||||||||||||||||||||| |||||||||    
T  8955879 tatttatcattaaattcacatgtgataaaccaaaggtcacaact 8955922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 84 - 223
Target Start/End: Complemental strand, 36971319 - 36971179
Alignment:
Q  84 ctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-t 182  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| ||||| |    
T  36971319 ctccattcattttcttttgatgttttagcttttgacacaagttttaagaagtaattaaagtatataaacatttgtgtgttttttacttaaatatccttat 36971220  T
Q  183 ttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  36971219 ttatcattaaattcacatgtgataaaccaaaggtcacaact 36971179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 45591019 - 45590873
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||| ||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||| |||||| | ||||||||||||||||||||    
T  45591019 tactccctccattcattttcttttgatgttttagctcttgacataagttgtaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgt 45590920  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     ||| |||||||||||||||| ||||||||||||||| |||||||||    
T  45590919 tcttatttatcattaaattcatatgtgataaaccaaaggtcacaact 45590873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 95 - 223
Target Start/End: Original strand, 33288421 - 33288551
Alignment:
Q  95 ttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgt-gttttttacttaaatgtcctt-tttatcattaa 192  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| |||||| | |||  |||||||||||||||||||| |||||||||||    
T  33288421 ttcttttgatgttttagctattgacacaagttttaaggagtaattaaagtatataaacatttgtgtatttttttacttaaatgtccttatttatcattaa 33288520  T
Q  193 attcacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||||||||||||||||||||||    
T  33288521 attcacatgtgataaaccaaatgtcacaact 33288551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 78 - 207
Target Start/End: Original strand, 30469213 - 30469343
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||| || | ||| ||||||||||||||||    
T  30469213 tactcccttcatttcttttcttttgatgttttaactcttgacacaagttttaagaagtaattaaagtatataaatatttgtgtattttttacttaaatgt 30469312  T
Q  178 cctt-tttatcattaaattcacatgtgataa 207  Q
    | || ||||||||||||||||||||||||||    
T  30469313 cattgtttatcattaaattcacatgtgataa 30469343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 39482138 - 39482003
Alignment:
Q  79 actccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtc 178  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||| ||||| ||| |||||||    
T  39482138 actccctccatttcttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtatttttgactaaaatgtc 39482039  T
Q  179 ctt-tttatcattaaattcacatgtgataaaccaaa 213  Q
    ||| ||||  ||||||||||||||||||||||||||    
T  39482038 cttatttagtattaaattcacatgtgataaaccaaa 39482003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 50774073 - 50774200
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat-gtcctttttatcatta 191  Q
    |||| |||| ||||||| ||||||||||||||||||||| ||||||||||||||| ||| || | ||||||||||||||||||  || | ||||||||||    
T  50774073 ttttttttttatgttttagctcttgacacaagttttaaggagtaattaaagtatataaatatttgtgtgttttttacttaaataatcttatttatcatta 50774172  T
Q  192 aattcacatgtgataaaccaaatgtcac 219  Q
    |||| ||||||||||||||||| |||||    
T  50774173 aatttacatgtgataaaccaaaagtcac 50774200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 34334613 - 34334463
Alignment:
Q  78 tactccctccattcctttt-cttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaa---acatatatgtgttttttacttaa 173  Q
    ||||||||||||||||||| ||||||||| ||   ||||| |||||||| ||||| ||||||||||||||| ||   |||| | | ||||||||||||||    
T  34334613 tactccctccattcctttttcttttgatgattaaactcttaacacaagtcttaaggagtaattaaagtatataataaacatttgtatgttttttacttaa 34334514  T
Q  174 atgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| || ||||||||||||||||||||||||||||||||  ||||||||    
T  34334513 atgtctttatttatcattaaattcacatgtgataaaccaaagatcacaact 34334463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 18835985 - 18835838
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    ||||||| ||||||  |||| ||||||||||||  || ||  ||||| ||||||| |||||||||| |||| ||| || | ||||||||| ||| |||||    
T  18835985 atactccttccatttattttattttgatgttttatcttttcgcacaaattttaaggagtaattaaaatatataaatatttgtgtgtttttaactaaaatg 18835886  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  18835885 tccttatttatcattaaattcacatgtgataaatcaaatgtcacaact 18835838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 77 - 193
Target Start/End: Complemental strand, 49162366 - 49162249
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||||||||||||| |||||||||||||||| ||| ||| ||||||||||||  ||||||||||||||| ||| || | |||| |||||||| |||||    
T  49162366 atactccctccattccctttcttttgatgttttagctattggcacaagttttaaagagtaattaaagtatataaatatttgtgtgatttttactaaaatg 49162267  T
Q  177 tcctt-tttatcattaaa 193  Q
    ||||| ||||||||||||    
T  49162266 tccttatttatcattaaa 49162249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 26025526 - 26025674
Alignment:
Q  76 catactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaat 175  Q
    |||||||||||| ||  || |||||||||||||| ||||||| ||||||| ||| | ||||||||||||||| ||| || | | ||||||  ||| ||||    
T  26025526 catactccctccgttttttatcttttgatgttttagctcttggcacaagtcttagggagtaattaaagtatagaaatatttgtatgttttggactaaaat 26025625  T
Q  176 gtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||||| ||||| |||||||||||||||||||| ||||| |||||||||    
T  26025626 gtccttatttatgattaaattcacatgtgataagccaaaggtcacaact 26025674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 109
Target Start/End: Original strand, 36016276 - 36016310
Alignment:
Q  75 tcatactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||||    
T  36016276 tcatactccctccattccttttcttttgatgtttt 36016310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 19256185 - 19256217
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  19256185 atactccctccattccttttcttttgatgtttt 19256217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 109
Target Start/End: Complemental strand, 19257137 - 19257106
Alignment:
Q  78 tactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||||||||||    
T  19257137 tactccctccattccttttcttttgatgtttt 19257106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 8956054 - 8956022
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||| ||||||||||||    
T  8956054 atactccctccattcctttttttttgatgtttt 8956022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 30469446 - 30469414
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||| |||||||||||||||||||||||    
T  30469446 atactcccttcattccttttcttttgatgtttt 30469414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 45590741 - 45590773
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||| |||||||||||||||||    
T  45590741 atactccctccattcattttcttttgatgtttt 45590773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 9e-54; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 15234032 - 15233886
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | | | ||||||||||||||||    
T  15234032 tactccctccattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtatattttttacttaaatgt 15233933  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  15233932 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 15233886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 41252693 - 41252546
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttacttaaatg 176  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | |||| |||||||||||||||    
T  41252693 tactctctccattcattttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaatg 41252594  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||||||    
T  41252593 tccttatttatcattaaattcacatgtgataaaacaaatgtcacaact 41252546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 82 - 223
Target Start/End: Original strand, 35792911 - 35793053
Alignment:
Q  82 ccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcct- 180  Q
    |||| |||||||||||||||||||||||  ||||||||| |||||||||| ||||||||||||||| |||||| | |||||||||||||||||||||||     
T  35792911 cccttcattccttttcttttgatgttttaactcttgacataagttttaaggagtaattaaagtatataaacatttgtgtgttttttacttaaatgtcctg 35793010  T
Q  181 ttttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
     |||||||||||||||||||| |||||||||||||||||||||    
T  35793011 atttatcattaaattcacatgcgataaaccaaatgtcacaact 35793053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 78 - 223
Target Start/End: Original strand, 43040849 - 43040995
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||||| |||| ||| || | |||| |||||||| ||||||    
T  43040849 tactccctccattccttttcttttgatgttttagctattggcacaagttttaaggagtaattaaaatatataaatatttgtgtgatttttactaaaatgt 43040948  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||    
T  43040949 ccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 43040995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 78 - 211
Target Start/End: Original strand, 44104546 - 44104681
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtg-ttttttacttaaatg 176  Q
    ||||||||||||||||||||||||||||||||  || |||||| |||||||||| ||||||||||||||| |||||| | |||| |||||||||||||||    
T  44104546 tactccctccattccttttcttttgatgttttaacttttgacataagttttaaggagtaattaaagtatataaacatttgtgtgtttttttacttaaatg 44104645  T
Q  177 tcctt-tttatcattaaattcacatgtgataaacca 211  Q
    || || ||||||||||||||||||||||||||||||    
T  44104646 tctttatttatcattaaattcacatgtgataaacca 44104681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 223
Target Start/End: Complemental strand, 41643156 - 41643025
Alignment:
Q  93 ttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcatta 191  Q
    |||||||||||||||||   ||||| ||||  ||||||  ||||||||||||||| ||| || | ||||||||||||| |||||||||| ||||||||||    
T  41643156 ttttcttttgatgttttaattcttggcacacattttaaagagtaattaaagtatataaatatttgtgtgttttttactaaaatgtccttatttatcatta 41643057  T
Q  192 aattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| |||||||||||| |||| |||||||||    
T  41643056 aattaacatgtgataaatcaaaggtcacaact 41643025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 21727949 - 21727803
Alignment:
Q  78 tactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgt 177  Q
    |||||||||| ||  || |||||||||||||| ||||||| ||||||| ||||| ||||||| ||||||| ||| || | | ||||||  ||| ||||||    
T  21727949 tactccctccgttttttatcttttgatgttttagctcttggcacaagtcttaaggagtaattgaagtatataaatatttgtatgttttggactaaaatgt 21727850  T
Q  178 cctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    |||| ||||| ||||||||||||||||||||  |||||| |||||||    
T  21727849 ccttgtttatgattaaattcacatgtgataaggcaaatgccacaact 21727803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 97 - 223
Target Start/End: Original strand, 31903400 - 31903526
Alignment:
Q  97 cttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatgtcctt-tttatcattaaatt 195  Q
    ||||||||||||| ||| ||| ||| | ||||||| ||||||||||||||| ||  || | ||||||||| ||  |||||||||| ||||||||||||||    
T  31903400 cttttgatgttttagcttttggcacgacttttaaggagtaattaaagtatataat-atttgtgtgtttttgaccaaaatgtccttatttatcattaaatt 31903498  T
Q  196 cacatgtgataaaccaaatgtcacaact 223  Q
    |||||||||||| ||||| |||||||||    
T  31903499 cacatgtgataatccaaaggtcacaact 31903526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 31296278 - 31296214
Alignment:
Q  158 tgtgttttttacttaaatgtcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  31296278 tgtgtttttt--ttaaatgtccttatttatcattaaattcacatgtgataaaccaaatatcacaact 31296214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 10112338 - 10112370
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  10112338 atactccctccattccttttcttttgatgtttt 10112370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 109
Target Start/End: Complemental strand, 43041127 - 43041095
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    |||||||||||||||||||||||||||||||||    
T  43041127 atactccctccattccttttcttttgatgtttt 43041095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 109
Target Start/End: Complemental strand, 35793186 - 35793152
Alignment:
Q  75 tcatactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||| |||||||||||||||||    
T  35793186 tcatactccctccattctttttcttttgatgtttt 35793152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 109
Target Start/End: Original strand, 41252414 - 41252446
Alignment:
Q  77 atactccctccattccttttcttttgatgtttt 109  Q
    ||||||||||||||||||||||||| |||||||    
T  41252414 atactccctccattccttttctttttatgtttt 41252446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 77 - 223
Target Start/End: Complemental strand, 44896 - 44751
Alignment:
Q  77 atactccctccattccttttcttttgatgttttggctcttgacacaagttttaagaagtaattaaagtatacaaacatatatgtgttttttacttaaatg 176  Q
    |||||| || ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||  |||| |||||||||||||||||||    
T  44896 atactctctacattccttttcttttgatgttttagctcttgacacaagttttaaggagtaattaaagtatataa--atatttgtgttttttacttaaatg 44799  T
Q  177 tcctt-tttatcattaaattcacatgtgataaaccaaatgtcacaact 223  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  44798 tccttatttatcattaaattcacatgtgataaaccaaaggtcacaact 44751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University