View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13588_high_22 (Length: 235)
Name: NF13588_high_22
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_22 |
 | |
|
| [»] scaffold0495 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 368919 - 369137
Alignment:
| Q |
5 |
aatggtaagaaatgaaaccattgtacaagaagccactgtactatgtagaggcaaaagtgattgcacacttcctagctggt---atacattggttctgtta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
368919 |
aatggtaagaaatgaaaccattgtacaagaagccactgtactatgtagaggcaaaagtgattgcacacttcctagctggtggtatacattggttctgtta |
369018 |
T |
|
| Q |
102 |
aatatatcatcaaattcacatatcagaatcaaatatttgatagaaataaattaatgggtatgaatgaaaagtaagtaacgtgatgataaaggatgagaat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
369019 |
aatatatcatcaaattcacatatcagaatcaaatatttgatagaaataaattaatgggtatgaatgaaaagtaagtaacgtgatgataaagcatgagaat |
369118 |
T |
|
| Q |
202 |
tgatggaggagaggagaag |
220 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
369119 |
tgacggaggagaggagaag |
369137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 10214 - 10248
Alignment:
| Q |
137 |
tttgatagaaataaattaatgggtatgaatgaaaa |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
10214 |
tttgatagaaataaattagtgggtatgaatgaaaa |
10248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 171
Target Start/End: Original strand, 10233490 - 10233524
Alignment:
| Q |
137 |
tttgatagaaataaattaatgggtatgaatgaaaa |
171 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
10233490 |
tttgatagaaataaattagtgggtatgaatgaaaa |
10233524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University