View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_high_3 (Length: 577)
Name: NF13588_high_3
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_3 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 1 - 577
Target Start/End: Complemental strand, 23496596 - 23496023
Alignment:
| Q |
1 |
agggaaggatgccgcccatcaaaggaggatttttggtgagtagtagcgatgcttgttcattgcttattttgatgttatcttatggcagctgtcgtttgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23496596 |
agggaaggatgccgcccatcaaaggaggatttttggtgagtagtagcgatgcttgttcattgcttattttgatgttatcttatggcggctgtcgtttgac |
23496497 |
T |
|
| Q |
101 |
ttttactttgtttttgtgcatattcggtggttctgttgagtatgttggaggccatgaaggaggagatgaacactcctgctgttcccgtggtggaggagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496496 |
ttttactttgtttttgtgcatattcggtggttctgttgagtatgttggaggccatgaaggaggagatgaacactcctgctgttcccgtggtggaggagga |
23496397 |
T |
|
| Q |
201 |
acaaccttgtggtgatgacagagtcgtccctctggagattgcgaatgcccttgccgcaaaggcggctgattctgcaaagggttagagtctgtcccggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23496396 |
acaaccttgtggtgatgacagagtcgtccctccggagattgc------ccttgccgcaaaggcggctgattctgcaaagggttagagtctgtcccggttg |
23496303 |
T |
|
| Q |
301 |
ttatgggatagggcgactctaaaaattgtacattccactaacaa---tggaggacaaattccatcatcactgatatatttgactcttctttcttttttcg |
397 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
23496302 |
ttatgggagagggcgactctaaaaattgtacattccaataacaaccttggaggacaaattccatcatcactgatatatttgactcttctttctttttttg |
23496203 |
T |
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| Q |
398 |
atttatcacataataacttaataggtctgattccaactaaaacaactgaacaatgaaaattaaattttttaggtatgtcttataacatgttaaatggaac |
497 |
Q |
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| T |
23496202 |
atttatcatataataacttaataggtctgattccaactaaaacaactgaacaatgaaaattaaattttttaggtatgtcttataacatgttaaatggaac |
23496103 |
T |
|
| Q |
498 |
aattccacgttggtgtttttctatttgtttgttgtaaatgttgcatctaaatgacaaacaggttagagggtcaagtagtg |
577 |
Q |
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| T |
23496102 |
aattccacgttggtgtttttctatttgtttattgtaaatgttgcatctaaatgacaaacaggttagagggtcaagtagtg |
23496023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 519
Target Start/End: Complemental strand, 14553552 - 14553510
Alignment:
| Q |
477 |
ttataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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| T |
14553552 |
ttataacatgttaaatggaacaattccacattggtgttattct |
14553510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Original strand, 37400532 - 37400572
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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| T |
37400532 |
ataacatgttaaatggaacaattccacattggtgttattct |
37400572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37533540 - 37533500
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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| T |
37533540 |
ataacatgttaaatggaacaattccacattggtgttattct |
37533500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37594764 - 37594724
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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| T |
37594764 |
ataacatgttaaatggaacaattccacattggtgttattct |
37594724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37640312 - 37640272
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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| T |
37640312 |
ataacatgttaaatggaacaattccacattggtgttattct |
37640272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37697227 - 37697187
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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||||||||||||||||||||||||||| |||||||| |||| |
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| T |
37697227 |
ataacatgttaaatggaacaattccacattggtgttattct |
37697187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37703108 - 37703068
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||| |
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| T |
37703108 |
ataacatgttaaatggaacaattccacattggtgttattct |
37703068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 480 - 519
Target Start/End: Complemental strand, 37824334 - 37824295
Alignment:
| Q |
480 |
taacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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|||||||||||||||||||||||||| |||||||| |||| |
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| T |
37824334 |
taacatgttaaatggaacaattccacattggtgttattct |
37824295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 514
Target Start/End: Complemental strand, 37436148 - 37436112
Alignment:
| Q |
478 |
tataacatgttaaatggaacaattccacgttggtgtt |
514 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
37436148 |
tataacatgttaaatggaacaattccacagtggtgtt |
37436112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 519
Target Start/End: Complemental strand, 37712064 - 37712024
Alignment:
| Q |
479 |
ataacatgttaaatggaacaattccacgttggtgtttttct |
519 |
Q |
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||||||||||||||||||||||||||| ||||||| |||| |
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| T |
37712064 |
ataacatgttaaatggaacaattccacagtggtgttattct |
37712024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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