View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_high_5 (Length: 531)
Name: NF13588_high_5
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 7149210 - 7148705
Alignment:
| Q |
11 |
catcatcacatgaacnnnnnnnccatcaccgccatcacatatcatgaatcaaaatagcaccatgattcttccattaccctttcttcctgaagaactcatt |
110 |
Q |
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| T |
7149210 |
catcatcacatgaacaaaaaaaccatcaccgccatcacatatcatgaatcaaaatagcaccatgattcttccattaccctttcttcctgaagaactcatt |
7149111 |
T |
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| Q |
111 |
cttgaaatcctcacaaaacttccaataaaatctctattacgtttcaggtgtgtatgcaaatcatggttacacataatttccaatccttacttcatnnnnn |
210 |
Q |
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| T |
7149110 |
cttgaaatcctcataaaacttccaataaaatctctattacgtttcaggtgtgtatgcaaatcatggttacacataatttccaatccttacttcataaaaa |
7149011 |
T |
|
| Q |
211 |
nncaacttcacttttcaacacaaaacactcacttcacaaccaatcatagaattatattgagtgctactacagctgaatttcacctcaaatcttgttctat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7149010 |
aacaacttcacttttcaacacaaaacactcacttcacaaccaatcatagaatcatattgagtgctactacagctgaatttcacctcaaatcttgttctat |
7148911 |
T |
|
| Q |
311 |
aacttctcttttcaataacccatcaacagtttctgaggaccttaactaccctgttaagaacaagtttcgccatgatggtattgttggttcttgtaatgga |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7148910 |
aacttctcttttcaataacccatcaacagtttctgatgaccttaactaccctgttaagaacaagtttcgccatgatggtattgttggttcttgtaatgga |
7148811 |
T |
|
| Q |
411 |
ttactttgttttgctataaaaggtgattgtgttcttctttggaacccttcaataagggtctctaaaaagtcaccacctttagggaataattggaaaccag |
510 |
Q |
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| T |
7148810 |
ttactttgttttgctataaaaggtgattgtgttcttctttggaacccttcaataagggtctctaaaaagtcaccacctttagggaataattggagaccag |
7148711 |
T |
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| Q |
511 |
gttgtt |
516 |
Q |
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|||||| |
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| T |
7148710 |
gttgtt |
7148705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 500
Target Start/End: Original strand, 13093202 - 13093335
Alignment:
| Q |
358 |
accctgttaagaacaagtttcgccatgatggtattgttggttcttgtaatggattactttgttttgctataaaaggtgattgtgttcttctttggaaccc |
457 |
Q |
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||||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| || ||||||||||||| |||||||||| |
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| T |
13093202 |
accctattaaggacaagtttcgtgatgatggtattgttggttcttgtaatggcttgctttttttggc---------tgattgtgttcttatttggaaccc |
13093292 |
T |
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| Q |
458 |
ttcaataagggtctctaaaaagtcaccacctttagggaataat |
500 |
Q |
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| T |
13093293 |
ttcaacaagggtttagaaaaaatcacaacctttggagaataat |
13093335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 425
Target Start/End: Original strand, 27617902 - 27617934
Alignment:
| Q |
393 |
gttggttcttgtaatggattactttgttttgct |
425 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
27617902 |
gttggttcttgcaatggattactttgttttgct |
27617934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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