View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_high_7 (Length: 465)
Name: NF13588_high_7
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 119 - 443
Target Start/End: Original strand, 33553663 - 33553985
Alignment:
| Q |
119 |
taagcaatccttctctcaaaaattaatcaatcttcaaactctttaaatatacatatatactctcttcattcttatactagttaaatgatcaaaattttaa |
218 |
Q |
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| T |
33553663 |
taagcaatccttctctcaaaaattaatcaatcttcaaactctttaaatata----tatactctcttcattcttata---gttaaatgatcaaaattt-aa |
33553754 |
T |
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| Q |
219 |
aaaatataattaatattgtatgaagaatgagaaaatataagcgattttaaa------gtnnnnnnnnnnnntattatgtgataaatagcaagggtataat |
312 |
Q |
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| T |
33553755 |
aaaatataattaatattgtatgaagaatgaaaaaatatgagcgattttacaaaaatagaaagtaaaaaaaatattatgtgataaatagtaagggtataat |
33553854 |
T |
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| Q |
313 |
aggaagnnnnnnncattgtataagacatataatttaagacaaacatattttattaagatgacgtatattttggaacataaacaatattatatttgaattg |
412 |
Q |
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| T |
33553855 |
agaaagaaaaaaacattgtataagacatataatttaagacaaacatattttattaagatgacgtatattttggaacataaacaatattatatttgaattg |
33553954 |
T |
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| Q |
413 |
tgtgtgattcatacttagactattttaaaat |
443 |
Q |
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| T |
33553955 |
tgtgtgattcatacataaactattttgaaat |
33553985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 33553587 - 33553628
Alignment:
| Q |
26 |
gatatgtatgaaccaaatacgacaataccaaaaccaaacgga |
67 |
Q |
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| T |
33553587 |
gatatgtatgaaccaaatacgacaataccaaaaccaaacgga |
33553628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 9227997 - 9228025
Alignment:
| Q |
339 |
atataatttaagacaaacatattttatta |
367 |
Q |
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| T |
9227997 |
atataatttaagacaaacatattttatta |
9228025 |
T |
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