View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13588_high_9 (Length: 432)

Name: NF13588_high_9
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13588_high_9
NF13588_high_9
[»] chr4 (1 HSPs)
chr4 (19-418)||(499314-499713)
[»] chr7 (3 HSPs)
chr7 (19-418)||(6924062-6924461)
chr7 (189-418)||(27528972-27529201)
chr7 (289-417)||(36988745-36988873)
[»] chr3 (3 HSPs)
chr3 (20-418)||(30831486-30831884)
chr3 (101-231)||(47460370-47460500)
chr3 (304-418)||(53116046-53116160)
[»] chr8 (2 HSPs)
chr8 (146-398)||(28384101-28384352)
chr8 (51-98)||(11299457-11299504)
[»] chr1 (1 HSPs)
chr1 (211-418)||(47448189-47448387)
[»] chr6 (1 HSPs)
chr6 (303-398)||(17260233-17260328)
[»] chr5 (1 HSPs)
chr5 (20-150)||(2912825-2912956)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 499713 - 499314
Alignment:
Q  19 atgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499713 atgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat 499614  T
Q  119 ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499613 ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga 499514  T
Q  219 atctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499513 atctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatt 499414  T
Q  319 aactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaattg 418  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  499413 aactcgtatgaccatcgaggaacttgtttactgatttcgtttattccagtacatttctttctattaaaaatggtttggttgttctgatcagttctaattg 499314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Complemental strand, 6924461 - 6924062
Alignment:
Q  19 atgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat 118  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6924461 atgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaat 6924362  T
Q  119 ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  6924361 ctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaagtccacttcaagaatagcgtcattgtcatttctaggaccaatattcaaagtcagtga 6924262  T
Q  219 atctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6924261 atctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatt 6924162  T
Q  319 aactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaattg 418  Q
    ||||||||||||||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6924161 aactcgtatgaccatcgaggaacttgtttactgatttcgtttattccagtacatttctttctattaaaaatggtttggttgttctgatcagttctaattg 6924062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 189 - 418
Target Start/End: Complemental strand, 27529201 - 27528972
Alignment:
Q  189 atttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagt 288  Q
    |||| ||||| ||| ||||||| | ||||||  ||||||||||||||||||||| ||||||| ||   |||||||||||||||||  ||||||| ||| |    
T  27529201 atttttaggatcaagattcaaatttagtgaacttgtattcccattaaaaattactatacgtttggtaattggggaacgaatctgagcctcttttattatt 27529102  T
Q  289 ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaa 388  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||| |||||    
T  27529101 cttttcgtcacttgctccaattcgtcgattaactcgtatgaccatcgaggaacttgtttactgatttcgtttattccactacatttctttctataaaaaa 27529002  T
Q  389 tggtttggttgttctgatcagttctaattg 418  Q
    |||||||||||||| |||||||||||||||    
T  27529001 tggtttggttgttccgatcagttctaattg 27528972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 289 - 417
Target Start/End: Original strand, 36988745 - 36988873
Alignment:
Q  289 ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaa 388  Q
    |||||| ||| ||||||||||||||||||||| | |||||||||| ||||||||| ||||  ||||| ||||||||  ||||||||||||||||||||||    
T  36988745 ctttccatcacttgctccaattcgtcgattaagttgtatgaccattgaggaacttgtttactgatttagtttattcagctacatttctttctattaaaaa 36988844  T
Q  389 tggtttggttgttctgatcagttctaatt 417  Q
    ||||||||||||||  |||||||||||||    
T  36988845 tggtttggttgttccaatcagttctaatt 36988873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 20 - 418
Target Start/End: Complemental strand, 30831884 - 30831486
Alignment:
Q  20 tgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaatc 119  Q
    |||||||||||| ||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  30831884 tgggggaatgggcctgtccagttccttgaacaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcggtcataatc 30831785  T
Q  120 tggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtgaa 219  Q
    || ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  30831784 tgattcacgtaaaaaatttagtagaaaaaattcgtgattcaggtccagttcaggaatagcatcattgtcatttctaggaccaagattcaaagtcagtgaa 30831685  T
Q  220 tctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatta 319  Q
    |||||||||| |||||| ||||||||||||||||||| ||||||||||||||||  ||||||||||||||||| ||||| |||||| |||||||||||||    
T  30831684 tctgtattcctattaaatattaccatacgttcggcttctggggaacgaatctgagtctcttttgttagtcttttcgtcacttgctctaattcgtcgatta 30831585  T
Q  320 actcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagttctaattg 418  Q
    |||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30831584 actcgtatgaccatcgaggaacttgtttactgatttcgtttattccactacatttctttctattaaaaatggtttggttgttccgatcagttctaattg 30831486  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 101 - 231
Target Start/End: Original strand, 47460370 - 47460500
Alignment:
Q  101 ttatatctcgatcaaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47460370 ttatatctcgatcaaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc 47460469  T
Q  201 aatattcaaagtcagtgaatctgtattccca 231  Q
    |||||||||||||||||| ||||||||||||    
T  47460470 aatattcaaagtcagtgactctgtattccca 47460500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 53116160 - 53116046
Alignment:
Q  304 tccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttct 403  Q
    ||||||||||||||||| | |||||||||||||| |||||  |||  ||||| |||||||||||||||||||||| |||||||||||||||||||||||     
T  53116160 tccaattcgtcgattaagttgtatgaccatcgagaaacttggttactgattttgtttattccactacatttctttttattaaaaatggtttggttgttcc 53116061  T
Q  404 gatcagttctaattg 418  Q
    |||  ||||||||||    
T  53116060 gatgggttctaattg 53116046  T

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Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 146 - 398
Target Start/End: Original strand, 28384101 - 28384352
Alignment:
Q  146 aaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccat 245  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||| ||    
T  28384101 aaaattcgtgatttaggtccagttcaggaatagcgtcattgtcatt-ctaggaccaagattcaaagttagtgaatctgtattcctattaaaaattactat 28384199  T
Q  246 acgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgaggaacttct 345  Q
    ||||||||||  | || ||||||| |||  |||||||| || ||||||||||| |||||||| ||| || ||||| | |||||||||| ||| ||||| |    
T  28384200 acgttcggctcgtaggaaacgaatttgagcctcttttgataatctttccgtcacttgctccatttcatctattaagttgtatgaccattgagaaacttgt 28384299  T
Q  346 ttagcgatttcgtttattccactacatttctttctattaaaaatggtttggtt 398  Q
    |||  ||||||| |||||||||||||||||||| |||||||||||||||||||    
T  28384300 ttactgatttcgattattccactacatttctttgtattaaaaatggtttggtt 28384352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 11299457 - 11299504
Alignment:
Q  51 aagtttcgttgtcgctattttacgccttagagggcgcatagatccctt 98  Q
    ||||||||  |||| ||||||||||||||||||| |||||||||||||    
T  11299457 aagtttcgaagtcgttattttacgccttagagggtgcatagatccctt 11299504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 5e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 211 - 418
Target Start/End: Original strand, 47448189 - 47448387
Alignment:
Q  211 gtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaatt 310  Q
    |||||||||||||||||||||||||||         |||| ||||||||||||||||||||||  |||||||||||||||||| |||| |||||||||||    
T  47448189 gtcagtgaatctgtattcccattaaaa---------cgtttggcttttggggaacgaatctgagcctcttttgttagtctttctgtcacttgctccaatt 47448279  T
Q  311 cgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggttgttctgatcagt 410  Q
     ||||||||||||||||||||||| |||||||| ||||  ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47448280 tgtcgattaactcgtatgaccatcaaggaacttgtttactgattttgtttattccactacatttctttctattaaaaatggtttggttgttccgatcagt 47448379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 303 - 398
Target Start/End: Complemental strand, 17260328 - 17260233
Alignment:
Q  303 ctccaattcgtcgattaactcgtatgaccatcgaggaacttctttagcgatttcgtttattccactacatttctttctattaaaaatggtttggtt 398  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  17260328 ctccaattcgtcgattaactcgtatgaccatcgaggaacttgtttactaatttcgtttattccactacatttctttctattaaaaatggtttggtt 17260233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 2912825 - 2912956
Alignment:
Q  20 tgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctatttt-acgccttagagggcgcatagatcccttaattatatctcgatcaaaat 118  Q
    ||||||||||||  |||||| ||||||||  |||||||   |||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||| |||    
T  2912825 tgggggaatgggaatgtccagttccttgaacaagtttcaaagtcgttatttttacgacttagagggtgcatagatcccttaattatatctcggtcataat 2912924  T
Q  119 ctggttcgcgtaaaaaatttactagaaaaaat 150  Q
    ||||||||||||||||||||| | ||||||||    
T  2912925 ctggttcgcgtaaaaaatttaattgaaaaaat 2912956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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