View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_1 (Length: 948)
Name: NF13588_low_1
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 10 - 561
Target Start/End: Original strand, 43602786 - 43603349
Alignment:
| Q |
10 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
109 |
Q |
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| T |
43602786 |
acatcatcacctttgcagcaggatccttatgatcctttcacttattctcagaattttgaacaagggacagtgtttgatgaaccagattacctgtctagat |
43602885 |
T |
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| Q |
110 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
209 |
Q |
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| T |
43602886 |
ctttctctgttcggtttgccgatccttgtaaatttattaattatcaaaagaaatgagtagtttaaggcaaagctagggaaatttgagactttatgttagc |
43602985 |
T |
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| Q |
210 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
309 |
Q |
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| T |
43602986 |
aatgtttgcatctctttttcttcatattacttagcctatagtctgattcttctttttgtttatgcaatgtttatcaccggttatatgcatatttttaatt |
43603085 |
T |
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| Q |
310 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcacaagggttgtaaagtttt |
409 |
Q |
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| T |
43603086 |
tgtaatataagtgagaccattgcacggtggagttcaattttattgatggagaagttatgacttatggggaaattatttttcataagggtagtaaagtttt |
43603185 |
T |
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| Q |
410 |
taatttgtgcatggggtg-------taagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattct----caccataaaaactaacaata |
498 |
Q |
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| T |
43603186 |
taatttgtgcatggggtgtaagagttaagagttaagaagtgaagtgatgagaggttaaatgtttgatctccattctcacccaccataaaaactaacaata |
43603285 |
T |
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| Q |
499 |
tt-aacattggttgatttaaagaaagtgaatatgggtagaacgaaggttaagtggtttttcatt |
561 |
Q |
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| T |
43603286 |
ttaaacattggttgatttaaagaaagtgaatatgtgtagaacgaaggttaagtggtttttcatt |
43603349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 560 - 692
Target Start/End: Original strand, 43603374 - 43603507
Alignment:
| Q |
560 |
ttgagtaatgtgcgaacc-tctgaaatatttgctcaagggttaattaccctccacttaatctatatgtatcattctgaggttgtaaacttgtaatgagat |
658 |
Q |
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| T |
43603374 |
ttgagtaatgtgcgaaccctctgaaatatttgctcaagggttaattaccctccacttaatctatatgtatcattctgaggttgtaaacttgtaatgagat |
43603473 |
T |
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| Q |
659 |
aaagcacctccttgtacttttttttaacatatca |
692 |
Q |
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| T |
43603474 |
gaagcacctccttgtacttttttttaacatatca |
43603507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 745 - 861
Target Start/End: Original strand, 43603558 - 43603674
Alignment:
| Q |
745 |
cacacccatgacatcagtcaagagggctgataacaaagtgttaggagatcctgcaccatagtaatagggtcaacatcactagcttccgattttgttaaga |
844 |
Q |
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| T |
43603558 |
cacacccatgacatcagtcaagagggctgataacaaagtgctaggagatcctgcaccatagtaatagggtcaacatcactagcttccgattttgttaaga |
43603657 |
T |
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| Q |
845 |
tatttatggaaatattc |
861 |
Q |
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| T |
43603658 |
tatttatggaaatattc |
43603674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 881 - 929
Target Start/End: Original strand, 43603843 - 43603891
Alignment:
| Q |
881 |
aagactcattctctcatcatgtaatctccagtaatcttcaacaagttga |
929 |
Q |
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| T |
43603843 |
aagactcattctctcatcatgtaatctctagtaatcttcaacaagttga |
43603891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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