View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13588_low_11 (Length: 526)
Name: NF13588_low_11
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 47 - 514
Target Start/End: Complemental strand, 11901777 - 11901309
Alignment:
| Q |
47 |
aaggtaagccaagtcaaagatatagacaaaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcaca |
146 |
Q |
| |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
11901777 |
aaggtaagccatgtcaaagatatagaccgaaagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatcgtcaca |
11901678 |
T |
|
| Q |
147 |
ccttgtctaactggctccattccatccaatgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
246 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901677 |
ccttgtctaactggctccattccatccagtgtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccaca |
11901578 |
T |
|
| Q |
247 |
tctcaaggttctccaacttcggagactggactctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnn |
345 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| ||||| |
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| T |
11901577 |
tctcaaggttctccaaattcggagactggactctctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctactaccccaatattgttt |
11901478 |
T |
|
| Q |
346 |
nnnccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgca |
445 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11901477 |
tttccatccttgaaggaacttacaatttcggattgtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgca |
11901378 |
T |
|
| Q |
446 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
514 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11901377 |
tttcaaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
11901309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 77 - 514
Target Start/End: Original strand, 12039554 - 12039992
Alignment:
| Q |
77 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
176 |
Q |
| |
|
|||| |||||| ||| ||| ||||| | ||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||| || ||| | || | |
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|
| T |
12039554 |
aagtcgcttgactgtattgtgccaccttcgaatctgagagtgttattcattgtggggtacaatggtcacaccttgtctgactggttcggttcacttcatt |
12039653 |
T |
|
| Q |
177 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
276 |
Q |
| |
|
|||||||||||||||||||||| ||||| || |||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| || |||| |
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|
| T |
12039654 |
gtcttgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttgga |
12039753 |
T |
|
| Q |
277 |
ctctctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaata-nnnnnnnnccatccttgaaggaacttacaatctcg |
375 |
Q |
| |
|
||| ||||||||||||| | ||||||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||| |
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|
| T |
12039754 |
ctcactgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaatattattttttccatccttgaaggaacttacaatctcg |
12039853 |
T |
|
| Q |
376 |
gattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatttcaaaactaaacatccaatgttgtccta |
475 |
Q |
| |
|
|||||||| ||||| || ||||||||| ||| |||||| |||| |||||||||||||| ||||||||||||||| |||||||| |||||| ||| || | |
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|
| T |
12039854 |
gattgtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatttccaaactaaatgtccaatattgcccca |
12039953 |
T |
|
| Q |
476 |
aattagcttgcatgcctctatatcctggtcttgatgatg |
514 |
Q |
| |
|
| |||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
12039954 |
agttagcttgcatgccactatatcctaatcttgatgatg |
12039992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 82 - 293
Target Start/End: Original strand, 11828659 - 11828870
Alignment:
| Q |
82 |
gcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtctt |
181 |
Q |
| |
|
|||||||||||| |||||||||| ||| || || |||||| |||| |||||||| |||||||| ||||||||||||||| ||| | ||||| ||| |
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|
| T |
11828659 |
gcttgattgtctccagccacatccaaatctgcaagtgctattagttgtcgggtacaacggtcacacattgtctaactggctcgcttcacttcaatgcctt |
11828758 |
T |
|
| Q |
182 |
gttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctc |
281 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
11828759 |
gttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactctt |
11828858 |
T |
|
| Q |
282 |
tgaaattcattg |
293 |
Q |
| |
|
||||||| |||| |
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|
| T |
11828859 |
tgaaatttattg |
11828870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 86 - 293
Target Start/End: Original strand, 11860795 - 11861002
Alignment:
| Q |
86 |
gattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaatgtcttgtta |
185 |
Q |
| |
|
|||||||| |||||||||| |||| ||| || |||||| |||| |||||| |||| |||| |||||||| |||||| ||| | |||| |||| || |
|
|
| T |
11860795 |
gattgtctcgagccacatcagaatctgaaagagctattagttgtcgggtaccatggccacatgttgtctaattggctcgcttcacttcaattccttggta |
11860894 |
T |
|
| Q |
186 |
agtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactggactctctgaa |
285 |
Q |
| |
|
| ||||||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
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|
| T |
11860895 |
aatttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaa |
11860994 |
T |
|
| Q |
286 |
attcattg |
293 |
Q |
| |
|
|||||||| |
|
|
| T |
11860995 |
attcattg |
11861002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 349 - 514
Target Start/End: Original strand, 11861038 - 11861203
Alignment:
| Q |
349 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
448 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||| |||||||||||| |||| || || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
11861038 |
ccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcattt |
11861137 |
T |
|
| Q |
449 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
514 |
Q |
| |
|
|||| ||||| ||||||| ||||||| | ||||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
11861138 |
caaagctaaatatccaatattgtcctcagttagcttccatgccactatatcccggtcttgatgatg |
11861203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 349 - 514
Target Start/End: Original strand, 11828906 - 11829071
Alignment:
| Q |
349 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcattt |
448 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||| || ||| |||||||| ||||||| || |||| ||||||||||||| |||||||||||||| |
|
|
| T |
11828906 |
ccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcattt |
11829005 |
T |
|
| Q |
449 |
caaaactaaacatccaatgttgtcctaaattagcttgcatgcctctatatcctggtcttgatgatg |
514 |
Q |
| |
|
|||| ||||| ||||||| |||||| ||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
11829006 |
caaagctaaatatccaatactgtcctcaattagcttgcatgctgctctatcccggtcttgatgatg |
11829071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 77 - 293
Target Start/End: Original strand, 11732458 - 11732674
Alignment:
| Q |
77 |
aagttgcttgattgtcttgagccacatccgaatttgagagcgctattcattgtggggtacaatggtcacaccttgtctaactggctccattccatccaat |
176 |
Q |
| |
|
||||| ||||| ||||| | |||| ||| ||||||| || ||||||||||| ||||||||||| | |||||| ||||| |||||| |||| | |||| |
|
|
| T |
11732458 |
aagttacttgaatgtctccaaccacctcccaatttgaaagttctattcattgtagggtacaatggccgcaccttatctaaatggctcgattcgcttcaat |
11732557 |
T |
|
| Q |
177 |
gtcttgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaacttcggagactgga |
276 |
Q |
| |
|
| ||||||||||||||||||| |||||||| |||||| | ||||| || ||||| ||||| |||||| ||||||||| |||||| |||||||| |||| |
|
|
| T |
11732558 |
gccttgttaagtttaccttgagtgactgtcctaaatgcaaatttctaccgccaatcgatcaccttccaaatctcaaggctctccatcttcggaggttgga |
11732657 |
T |
|
| Q |
277 |
ctctctgaaattcattg |
293 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
11732658 |
atctcttgaattcattg |
11732674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 491
Target Start/End: Original strand, 11732735 - 11732876
Alignment:
| Q |
353 |
ccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatga---gatttggggtaatgatagaccatatttcagttgcatttc |
449 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| || ||||||||||| ||||||| || | | || | ||||||| |||| ||||||||| |
|
|
| T |
11732735 |
ccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatgataagacattgaaaaaaaacagaccatctttcccttgcatttc |
11732834 |
T |
|
| Q |
450 |
aaaactaaacatccaatgttgtcctaaattagcttgcatgcc |
491 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| ||| |||| |
|
|
| T |
11732835 |
aaaactaaatatccgatgttgtcctaaattagcatgcgtgcc |
11732876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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