View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13588_low_14 (Length: 449)

Name: NF13588_low_14
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13588_low_14
NF13588_low_14
[»] chr8 (5 HSPs)
chr8 (16-449)||(4152949-4153382)
chr8 (16-449)||(4123599-4124032)
chr8 (56-449)||(4163342-4163735)
chr8 (16-449)||(4134144-4134577)
chr8 (16-449)||(4144946-4145379)


Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 4152949 - 4153382
Alignment:
Q  16 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4152949 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaat 4153048  T
Q  116 tccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4153049 tccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctc 4153148  T
Q  216 ggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagac 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4153149 ggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagac 4153248  T
Q  316 tagctgaataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttgg 415  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||| |||  |||| |||||||||||| |||||    
T  4153249 tagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttgg 4153348  T
Q  416 aacagcggcatccgcagggtgagtgaaactatcc 449  Q
    |||||| ||||| |||||||| ||||||||||||    
T  4153349 aacagctgcatctgcagggtgtgtgaaactatcc 4153382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 4123599 - 4124032
Alignment:
Q  16 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaat 115  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||||    
T  4123599 aaaaatcacactcattttgatcaacctcaaatctaagaagttcctttttattcatatactcaaccaacttaagtgttccatgtggtgtcaatgacagaat 4123698  T
Q  116 tccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctc 215  Q
    ||| ||||||||||| || || |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||  |||||||| ||||||||| |||    
T  4123699 tccaaacatagttttgtcggcgaaattgtaagtaatataagtagttccatcattgtcttgaacaaaatgccaaccgtgtaaatacttggttaacatactc 4123798  T
Q  216 ggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagac 315  Q
    |||| |||||||||||||  ||||||||||||||| |||||||||||||| || ||||| | ||||||||||||||||||||||||||||||||||||||    
T  4123799 ggtgttccgagaaaaaccaatccattccatggaccagttctccaatgaattttcttatcataccaaatgaaaacttctggtgcatccaatctttcaagac 4123898  T
Q  316 tagctgaataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttgg 415  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| || ||| |||  |||| |||||||||||| |||||    
T  4123899 tagctgaataatgtcctgaagaaggatcattatcactttttcttgatacaaaggatattttcttacctgttacttggttagctgcaattctcattgttgg 4123998  T
Q  416 aacagcggcatccgcagggtgagtgaaactatcc 449  Q
    |||||| ||||| |||||||| ||||||||||||    
T  4123999 aacagctgcatctgcagggtgtgtgaaactatcc 4124032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 56 - 449
Target Start/End: Original strand, 4163342 - 4163735
Alignment:
Q  56 ttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaattccgaacatagttttatcagcaaaattgtaagtaatataa 155  Q
    |||||| ||||||| | |||||| |||||| ||||||||||  |||||||||||||||||||| ||||||| |||  | || ||||  ||||| | ||||    
T  4163342 ttccttattattcaaaaactcaaccaacttaagtgttccatttggtgtcaatgagagaattccaaacatagctttgacggcgaaatcataagttagataa 4163441  T
Q  156 gtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaacccttccattccatggacctgttc 255  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  4163442 gtagttccatctttgtcttgatcaaaacgccaaccggctaaatactcggttaacattctcggtgatccgagaaaaaccgttccattccatggaccagttc 4163541  T
Q  256 tccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagactagctgaataatgtcctgaagaaggatcattttcactttt 355  Q
    ||||||||||  | ||||| | |||||| ||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||    
T  4163542 tccaatgaattctcttatcataccaaataaaaacttctggtgcatccaatctttcaagacttcctatataatgtcctgaagaaggatcattttcactttt 4163641  T
Q  356 tcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcc 449  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163642 tcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttggaacagcggcatccgcagggtgagtgaaactatcc 4163735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 4134144 - 4134577
Alignment:
Q  16 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaat 115  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||    
T  4134144 aaaaatcacactcattttgatccacctcaagtctaaaatgttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaat 4134243  T
Q  116 tccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctc 215  Q
    ||| ||||||||||| || || ||||| ||||| ||| |||| |||||||||  |||   | | |||||||||||   || ||| |||||| ||| |||     
T  4134244 tccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatctt 4134343  T
Q  216 ggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagac 315  Q
    || | |||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  4134344 ggcgttccgagaaaaacccttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacac 4134443  T
Q  316 tagctgaataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttgg 415  Q
    ||  || | ||||||| |||||||||||||| ||||||||||||| ||||||||  || | ||| || ||  ||||||||||||||||| |||||| |||    
T  4134444 taattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttattagatgcaattttcatcgatgg 4134543  T
Q  416 aacagcggcatccgcagggtgagtgaaactatcc 449  Q
    |||||| | ||| |||||||| ||||||||||||    
T  4134544 aacagctgaatctgcagggtgtgtgaaactatcc 4134577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 4144946 - 4145379
Alignment:
Q  16 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcatatactcaatcaacttgagtgttccatgcggtgtcaatgagagaat 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||| |||||||||||||||||    
T  4144946 aaaaatcacactcattttgatcaacctcaagtctaaaaagttcctttttattcttatactcaatcaacttaagtgtcccatgtggtgtcaatgagagaat 4145045  T
Q  116 tccgaacatagttttatcagcaaaattgtaagtaatataagtagttccatcagtgtcttgatcaaaacgccaaccggctaaatactcggttaacattctc 215  Q
    ||| ||||||||||| || || ||||| ||||| ||| |||| |||||||||  |||   | | |||||||||||   || ||| |||||| ||| |||     
T  4145046 tccaaacatagttttgtcggcgaaattataagttataaaagtggttccatcatcgtcgacacctaaacgccaaccaaatagatattcggttgacaatctt 4145145  T
Q  216 ggtgatccgagaaaaacccttccattccatggacctgttctccaatgaatatttttatctttccaaatgaaaacttctggtgcatccaatctttcaagac 315  Q
    || | |||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| ||    
T  4145146 ggcgttccgagaaaaactcttccattccatggaccagttctccaataaatttttttatctttccaaatgaaaacttctggtacatccaatctttcaacac 4145245  T
Q  316 tagctgaataatgtcctgaagaaggatcattttcactttttcttgatacaaaagatatattcttccccgttgctttattagatgcaattctcatcgttgg 415  Q
    ||  || | ||||||| |||||||||||||| ||||||||||||| ||||||||  || | ||| || ||  |||| |||||||||||| |||||| |||    
T  4145246 taattgtaaaatgtcccgaagaaggatcattgtcactttttcttgctacaaaagcaatttgcttacctgtaactttgttagatgcaattttcatcgatgg 4145345  T
Q  416 aacagcggcatccgcagggtgagtgaaactatcc 449  Q
    |||||| | ||| | |||||| ||||||||||||    
T  4145346 aacagctgaatctgaagggtgtgtgaaactatcc 4145379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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