View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13588_low_16 (Length: 380)

Name: NF13588_low_16
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13588_low_16
NF13588_low_16
[»] chr5 (24 HSPs)
chr5 (16-316)||(17510271-17510571)
chr5 (16-316)||(42019786-42020086)
chr5 (16-290)||(17505166-17505440)
chr5 (19-290)||(43579876-43580147)
chr5 (16-316)||(42024566-42024866)
chr5 (16-290)||(41858806-41859071)
chr5 (180-290)||(41853846-41853956)
chr5 (169-289)||(1413100-1413220)
chr5 (169-290)||(36254517-36254638)
chr5 (169-316)||(24770605-24770752)
chr5 (169-285)||(26709688-26709804)
chr5 (169-285)||(26979422-26979538)
chr5 (16-158)||(1413806-1413945)
chr5 (169-259)||(24776116-24776206)
chr5 (16-97)||(41853761-41853842)
chr5 (16-158)||(24776563-24776702)
chr5 (16-158)||(36254038-36254177)
chr5 (16-158)||(26709305-26709444)
chr5 (16-158)||(26979039-26979178)
chr5 (16-158)||(24771108-24771247)
chr5 (320-366)||(17508630-17508676)
chr5 (320-366)||(41857149-41857195)
chr5 (320-366)||(42023542-42023588)
chr5 (320-366)||(24772849-24772895)
[»] chr4 (35 HSPs)
chr4 (16-316)||(8984987-8985287)
chr4 (16-316)||(13700723-13701023)
chr4 (16-316)||(21304535-21304835)
chr4 (16-316)||(8979867-8980167)
chr4 (16-316)||(21299415-21299715)
chr4 (16-316)||(54991689-54991989)
chr4 (22-316)||(54990392-54990686)
chr4 (41-290)||(39999363-39999609)
chr4 (41-290)||(40004321-40004567)
chr4 (41-290)||(54343497-54343743)
chr4 (41-290)||(54348651-54348897)
chr4 (86-290)||(36359664-36359868)
chr4 (41-290)||(36354436-36354682)
chr4 (169-290)||(53798329-53798450)
chr4 (169-316)||(41393858-41394005)
chr4 (169-290)||(51018732-51018853)
chr4 (169-316)||(9763273-9763420)
chr4 (169-316)||(13695757-13695904)
chr4 (169-316)||(13711370-13711517)
chr4 (169-316)||(4207042-4207188)
chr4 (16-158)||(9763771-9763910)
chr4 (16-168)||(51019117-51019266)
chr4 (16-158)||(41393447-41393584)
chr4 (21-158)||(53797836-53797970)
chr4 (169-289)||(47045647-47045767)
chr4 (16-158)||(13695364-13695503)
chr4 (16-158)||(13710870-13711010)
chr4 (21-158)||(47046060-47046195)
chr4 (320-366)||(13699067-13699113)
chr4 (320-366)||(21301325-21301371)
chr4 (320-366)||(36357870-36357916)
chr4 (320-366)||(40002798-40002844)
chr4 (320-366)||(54346932-54346978)
chr4 (320-366)||(8981777-8981823)
chr4 (320-366)||(13702945-13702991)
[»] chr1 (18 HSPs)
chr1 (16-316)||(27711536-27711836)
chr1 (16-290)||(37409145-37409419)
chr1 (16-290)||(27716656-27716930)
chr1 (16-290)||(37404026-37404298)
chr1 (16-290)||(11250731-11251005)
chr1 (87-290)||(34317840-34318043)
chr1 (41-290)||(36684270-36684516)
chr1 (169-316)||(5725365-5725512)
chr1 (169-316)||(3585301-3585448)
chr1 (169-315)||(5730771-5730917)
chr1 (169-290)||(48245998-48246119)
chr1 (16-158)||(5730307-5730446)
chr1 (16-158)||(3584803-3584942)
chr1 (20-168)||(48246427-48246572)
chr1 (231-290)||(50959010-50959069)
chr1 (320-366)||(27715000-27715046)
chr1 (320-366)||(37405908-37405954)
chr1 (320-366)||(5728674-5728721)
[»] chr6 (21 HSPs)
chr6 (19-316)||(22702948-22703245)
chr6 (16-316)||(21401954-21402254)
chr6 (41-316)||(22697772-22698044)
chr6 (16-316)||(29490812-29491118)
chr6 (169-316)||(2817401-2817548)
chr6 (169-316)||(34142781-34142928)
chr6 (169-316)||(34155397-34155544)
chr6 (169-316)||(6727777-6727924)
chr6 (169-316)||(34376464-34376611)
chr6 (169-316)||(24190654-24190802)
chr6 (169-316)||(31983475-31983622)
chr6 (16-158)||(31981765-31981904)
chr6 (16-87)||(21396912-21396983)
chr6 (16-158)||(34376131-34376270)
chr6 (16-158)||(24191126-24191266)
chr6 (16-158)||(24192223-24192363)
chr6 (16-146)||(34142290-34142418)
chr6 (16-146)||(34154906-34155034)
chr6 (16-158)||(2817901-2818040)
chr6 (320-366)||(22699738-22699784)
chr6 (105-158)||(6728193-6728246)
[»] scaffold0517 (2 HSPs)
scaffold0517 (16-290)||(3776-4050)
scaffold0517 (320-366)||(2120-2166)
[»] chr3 (29 HSPs)
chr3 (16-290)||(55129003-55129276)
chr3 (16-283)||(17368932-17369199)
chr3 (41-316)||(20090191-20090463)
chr3 (41-316)||(20095316-20095588)
chr3 (41-290)||(15762585-15762831)
chr3 (41-290)||(15767746-15767992)
chr3 (169-316)||(3481649-3481796)
chr3 (169-290)||(34128437-34128558)
chr3 (169-290)||(17358566-17358686)
chr3 (169-290)||(30338126-30338247)
chr3 (169-316)||(30341204-30341351)
chr3 (169-290)||(54271312-54271433)
chr3 (169-259)||(3476249-3476339)
chr3 (169-259)||(4117007-4117097)
chr3 (16-158)||(54270846-54270986)
chr3 (16-158)||(17358040-17358179)
chr3 (31-158)||(3482166-3482290)
chr3 (16-158)||(4117345-4117485)
chr3 (16-158)||(34128923-34129062)
chr3 (16-158)||(10321645-10321784)
chr3 (16-158)||(3476699-3476839)
chr3 (320-366)||(3478439-3478485)
chr3 (320-366)||(15764511-15764557)
chr3 (320-366)||(17362634-17362680)
chr3 (320-366)||(17367276-17367322)
chr3 (320-366)||(20092142-20092188)
chr3 (70-158)||(30338506-30338595)
chr3 (107-158)||(30341720-30341771)
chr3 (88-133)||(10321816-10321861)
[»] chr2 (14 HSPs)
chr2 (16-316)||(40392532-40392832)
chr2 (16-290)||(40518075-40518354)
chr2 (41-290)||(42728175-42728421)
chr2 (86-289)||(42723007-42723210)
chr2 (41-290)||(44096596-44096842)
chr2 (99-290)||(44754161-44754352)
chr2 (99-290)||(44759327-44759518)
chr2 (99-287)||(40519929-40520122)
chr2 (169-316)||(4162895-4163042)
chr2 (169-316)||(28751021-28751168)
chr2 (16-158)||(4163331-4163470)
chr2 (16-158)||(28751483-28751622)
chr2 (320-366)||(42724940-42724986)
chr2 (320-366)||(44756092-44756138)
[»] chr7 (31 HSPs)
chr7 (41-316)||(33238296-33238568)
chr7 (41-290)||(47994094-47994340)
chr7 (86-316)||(33243515-33243745)
chr7 (41-290)||(47999269-47999515)
chr7 (169-316)||(21080321-21080468)
chr7 (169-290)||(2233978-2234099)
chr7 (169-316)||(32211965-32212112)
chr7 (169-316)||(42572600-42572747)
chr7 (169-290)||(17496100-17496221)
chr7 (169-290)||(17556993-17557114)
chr7 (169-316)||(12935084-12935231)
chr7 (169-316)||(19308876-19309023)
chr7 (169-316)||(47176496-47176643)
chr7 (16-158)||(2234384-2234523)
chr7 (176-290)||(16538699-16538813)
chr7 (176-290)||(16626849-16626963)
chr7 (169-316)||(43893542-43893689)
chr7 (16-158)||(12934599-12934738)
chr7 (16-158)||(42572147-42572286)
chr7 (21-158)||(17495610-17495744)
chr7 (21-158)||(17557470-17557604)
chr7 (21-158)||(21080793-21080927)
chr7 (16-158)||(19309365-19309504)
chr7 (16-158)||(16539166-16539305)
chr7 (16-158)||(16626357-16626496)
chr7 (237-316)||(47544749-47544828)
chr7 (16-158)||(43893070-43893210)
chr7 (16-146)||(32212419-32212547)
chr7 (320-366)||(33241732-33241778)
chr7 (320-366)||(47997529-47997575)
chr7 (70-158)||(47176904-47176993)
[»] scaffold0014 (3 HSPs)
scaffold0014 (41-290)||(31839-32085)
scaffold0014 (41-290)||(26667-26913)
scaffold0014 (320-366)||(30102-30148)
[»] scaffold0055 (1 HSPs)
scaffold0055 (41-290)||(3318-3564)
[»] scaffold0052 (1 HSPs)
scaffold0052 (41-290)||(80971-81217)
[»] chr8 (23 HSPs)
chr8 (41-290)||(32010820-32011066)
chr8 (41-290)||(32015994-32016240)
chr8 (61-316)||(2165394-2165650)
chr8 (169-316)||(43998546-43998693)
chr8 (169-316)||(17955134-17955281)
chr8 (169-290)||(24885324-24885445)
chr8 (169-316)||(42513848-42513995)
chr8 (16-168)||(24884915-24885064)
chr8 (169-259)||(21641184-21641273)
chr8 (16-158)||(21641520-21641659)
chr8 (16-158)||(21641895-21642034)
chr8 (16-158)||(21642270-21642409)
chr8 (16-158)||(21643020-21643159)
chr8 (16-158)||(21643835-21643974)
chr8 (16-158)||(21642645-21642784)
chr8 (16-158)||(21643395-21643534)
chr8 (16-158)||(43998984-43999123)
chr8 (320-366)||(21645574-21645620)
chr8 (320-366)||(32014255-32014301)
chr8 (87-150)||(42514182-42514245)
chr8 (16-72)||(17955626-17955682)
chr8 (322-362)||(19434003-19434043)
chr8 (322-362)||(19570152-19570192)
[»] scaffold0594 (2 HSPs)
scaffold0594 (169-316)||(8534-8681)
scaffold0594 (16-158)||(8962-9101)
[»] scaffold0166 (5 HSPs)
scaffold0166 (169-316)||(12986-13133)
scaffold0166 (169-259)||(18500-18590)
scaffold0166 (16-158)||(18946-19085)
scaffold0166 (16-158)||(13493-13633)
scaffold0166 (320-366)||(15233-15279)
[»] scaffold0060 (2 HSPs)
scaffold0060 (16-168)||(37212-37361)
scaffold0060 (169-227)||(37654-37712)
[»] scaffold0165 (1 HSPs)
scaffold0165 (320-366)||(15542-15588)


Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 17510271 - 17510571
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17510271 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 17510370  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17510371 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 17510470  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  17510471 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 17510570  T
Q  316 c 316  Q
    |    
T  17510571 c 17510571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 42019786 - 42020086
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42019786 tcgataaaccaaagaaggaggaaagaaagaatggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 42019885  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42019886 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaat 42019985  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  42019986 tcacattttacattagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 42020085  T
Q  316 c 316  Q
    |    
T  42020086 c 42020086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 17505166 - 17505440
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17505166 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 17505265  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17505266 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 17505365  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17505366 tcacactttacaatagtttttccatccttgtgtttacattccaaaggctccacaaactcactagtatattccaag 17505440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 43579876 - 43580147
Alignment:
Q  19 ataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  43579876 ataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaatcagagaagagtattcgattctcagt 43579975  T
Q  119 tttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattca 218  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43579976 tttggtgtgaaaaatactattcccgagctctcaatttataaggaggatttctactagagtatgtgatctacccgatgtgggacataaaattttcaattca 43580075  T
Q  219 cactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43580076 cactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 43580147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 42024566 - 42024866
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42024566 tcgaaaaaccaaagaaggaggaaagaaagaacgattcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 42024665  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42024666 aattttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaat 42024765  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||       ||||||||||||||||||    
T  42024766 tcacattttacactagtttctccatccttatgtttacattccaaaggctccacaaactcactagtatacttcaagtttttttcattatacactagtgttc 42024865  T
Q  316 c 316  Q
    |    
T  42024866 c 42024866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 41858806 - 41859071
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||||       ||||||| ||||||||||||| |||||||||||||||||    
T  41858806 tcgataaaccaaagaatgaggaaagaaagaacggttcgtcaacacaaaccgcgg-------aagagagaagagaaaaccagagaagagtattcgattctc 41858898  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  41858899 agttttggagtgaagaatactattcccgagctctcaatttataaggagaatttctactagagtgt--gatctacccgatgtgggacatagaattttcaat 41858996  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41858997 tcacactttacactaatttttccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 41859071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 180 - 290
Target Start/End: Original strand, 41853846 - 41853956
Alignment:
Q  180 tgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactag 279  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41853846 tgtgatctacccgatgtgggacatagaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactccctag 41853945  T
Q  280 tatactccaag 290  Q
    |||||||||||    
T  41853946 tatactccaag 41853956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 1413220 - 1413100
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1413220 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 1413121  T
Q  269 aaactcactagtatactccaa 289  Q
    | |   |||||||||||||||    
T  1413120 ataacaactagtatactccaa 1413100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 36254517 - 36254638
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||    
T  36254517 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaatgtctccac 36254616  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  36254617 ataacaactagtatactccaag 36254638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 24770752 - 24770605
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  24770752 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 24770653  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  24770652 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 24770605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 26709688 - 26709804
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26709688 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26709787  T
Q  269 aaactcactagtatact 285  Q
    ||||  |||||||||||    
T  26709788 aaaccaactagtatact 26709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 169 - 285
Target Start/End: Original strand, 26979422 - 26979538
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||| | ||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  26979422 ctactacaatgtgtaatctactcaatgtgggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccataggctccac 26979521  T
Q  269 aaactcactagtatact 285  Q
    ||||  |||||||||||    
T  26979522 aaaccaactagtatact 26979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 1413945 - 1413806
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||||||||| ||||||||||    
T  1413945 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagataagaggattcgattct 1413850  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  1413849 cggttttggagtgaagaatcccattcccgagctctctatttata 1413806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 24776206 - 24776116
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  24776206 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 24776116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 41853761 - 41853842
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccaga 97  Q
    ||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||| |||||||||||||    
T  41853761 tcgataaaccaaagaaggaggaaagaaagaacggttcgttaaaacaaaccgcgggagggagaagagagcagagaaaaccaga 41853842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 24776702 - 24776563
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||||||||||||||    
T  24776702 tcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagagtattcgattct 24776607  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | |||||||||| |||||||| | ||| |||||||| |||||||    
T  24776606 cggttttggagtaaagaataccaatcctgagctctctatttata 24776563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 36254038 - 36254177
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| |||| | |||||  |  ||| ||| |||||||| ||| ||||| |||||||||||    
T  36254038 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaactgagggag--atgagaaagg-gagaaaactagagaagaggattcgattctc 36254134  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttata 158  Q
     ||||||||||||||||| | |||||| ||||||| |||||||    
T  36254135 ggttttggagtgaagaatcccattcccaagctctctatttata 36254177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 26709305 - 26709444
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  |||||| ||||| |||||| ||||||    ||||||| |||| || |||||||||| | ||||| |||| |||||    
T  26709305 tcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcaattct 26709400  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||||||||||| | | |||||||||||| |||||||    
T  26709401 cagttttggagtgaagaatgcaaatcccgagctctctatttata 26709444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 26979039 - 26979178
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  |||||| ||||| |||||| ||||||    ||||||| |||| || |||||||||| | ||||| |||| |||||    
T  26979039 tcgagaaaccaaagaaggaggaagaaaagaatggttcatcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcaattct 26979134  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||||||||||| | | |||||||||||| |||||||    
T  26979135 cagttttggagtgaagaatgcaaatcccgagctctctatttata 26979178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 24771247 - 24771108
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| |||||| || ||||||    
T  24771247 tcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagagtgtttgattct 24771152  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
      |||||||||| |||||||| | ||| |||||||| |||||||    
T  24771151 tggttttggagtaaagaataccaatcctgagctctctatttata 24771108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 17508630 - 17508676
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17508630 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17508676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 41857149 - 41857195
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  41857149 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 41857195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 42023542 - 42023588
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42023542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42023588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 24772895 - 24772849
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  24772895 catcagtggcgtaccttttcccaacaaaaataccattcttagtgatg 24772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 8985287 - 8984987
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8985287 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 8985188  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8985187 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 8985088  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  8985087 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 8984988  T
Q  316 c 316  Q
    |    
T  8984987 c 8984987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 13700723 - 13701023
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13700723 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 13700822  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13700823 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 13700922  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  13700923 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 13701022  T
Q  316 c 316  Q
    |    
T  13701023 c 13701023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 21304835 - 21304535
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21304835 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 21304736  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21304735 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 21304636  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  21304635 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 21304536  T
Q  316 c 316  Q
    |    
T  21304535 c 21304535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 8980167 - 8979867
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8980167 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 8980068  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8980067 agttttggagtgaagaatactattctcgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatatgggacataaaattttcaat 8979968  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  8979967 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 8979868  T
Q  316 c 316  Q
    |    
T  8979867 c 8979867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 21299715 - 21299415
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21299715 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 21299616  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21299615 agttttggagtaaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 21299516  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  21299515 tcacactttacactagtttcttcatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 21299416  T
Q  316 c 316  Q
    |    
T  21299415 c 21299415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 54991689 - 54991989
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54991689 tcgataaaccaaagaaggagaaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 54991788  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54991789 agttttgaagtgaagaatactattcccgagctttcaatttataaggaggatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaat 54991888  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  54991889 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 54991988  T
Q  316 c 316  Q
    |    
T  54991989 c 54991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 54990686 - 54990392
Alignment:
Q  22 aaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagtttt 121  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||| ||||||||| |||||||||||||    
T  54990686 aaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagtagagaggagagaaaacaagagaagagtatttgattctcagtttt 54990587  T
Q  122 ggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacac 221  Q
    ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54990586 ggagtgaagaatactatacccgagctctcaatttataaggagaatttctactagagtgtgtgatctatccgatgtgggacataaaattttcaattcacac 54990487  T
Q  222 tttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||    
T  54990486 tttacactagtttctccatccttgtgttaacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacattagtgttcc 54990392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 39999363 - 39999609
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39999363 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 39999459  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999460 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 39999559  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  39999560 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 39999609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 40004321 - 40004567
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  40004321 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 40004417  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40004418 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 40004517  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  40004518 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 40004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 54343497 - 54343743
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54343497 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 54343593  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54343594 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 54343693  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54343694 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 54343743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 54348651 - 54348897
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54348651 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 54348747  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54348748 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 54348847  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  54348848 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 54348897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 36359664 - 36359868
Alignment:
Q  86 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 185  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  36359664 gagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattcctgagctctcaatttataaggagaatttctactagagtgtgtgat 36359763  T
Q  186 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36359764 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgttaacatttcaaaggctccacaaactcactagtatact 36359863  T
Q  286 ccaag 290  Q
    |||||    
T  36359864 ccaag 36359868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 36354436 - 36354682
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||     
T  36354436 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattt 36354532  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36354533 ctgagctctcaatttataaagaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 36354632  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  36354633 ccttgtgttaacattccaaaggctccacaaattcactagtatactccaag 36354682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 53798329 - 53798450
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  53798329 ctactagagtgtgtgatctacccaatgtaggacataaaattttcaattcacactttacactagtttctccattcttgtgtttacattccaaaggctccac 53798428  T
Q  269 aaactcactagtatactccaag 290  Q
    ||||  ||||||||||||||||    
T  53798429 aaaccaactagtatactccaag 53798450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 41393858 - 41394005
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  41393858 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttttccatccttgtgtttacattccaaaggcttcac 41393957  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  41393958 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 41394005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 51018853 - 51018732
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  51018853 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtgtacattccaaagtctccac 51018754  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||| ||||||    
T  51018753 ataacaactagtatattccaag 51018732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 9763420 - 9763273
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9763420 ctactagagtgtgtgatctactcaatgtgggacataaaattttcaattcatgctttacactagtttctacatccttgtgtttacattccaaagtctccac 9763321  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  9763320 ataacaactagtatactccaagtttatgccaatatacactagtgttcc 9763273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 13695757 - 13695904
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13695757 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13695856  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13695857 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13695904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 13711370 - 13711517
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13711370 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13711469  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13711470 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 13711517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 4207042 - 4207188
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||| | |||| |    
T  4207042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtg-ttacattccaatgtctcctc 4207140  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  4207141 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 4207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 9763910 - 9763771
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||  |  ||| ||| |||||||||||| ||||| |||||||||||    
T  9763910 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccgcgggag--atgaga-aggggagaaaaccagagaagaggattcgattctc 9763814  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttata 158  Q
     ||||||||||||||||||| | |||||||||||| |||||||    
T  9763813 ggttttggagtgaagaataccaatcccgagctctctatttata 9763771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 51019266 - 51019117
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  51019266 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 51019171  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 168  Q
    | ||||||||||||||||| | ||||||||| |||| |||||||  ||||||||    
T  51019170 cggttttggagtgaagaatcccattcccgaggtctctatttatagagaggattt 51019117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 41393447 - 41393584
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    | ||||| ||| || |||||||||||| ||||| |||||||||||    
T  41393447 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----atggagatgagggg-gagaaaaccagagaagaggattcgattctc 41393541  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttata 158  Q
     ||||||||||||||||| | |||||||||||||| |||||||    
T  41393542 ggttttggagtgaagaatcccattcccgagctctctatttata 41393584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 53797836 - 53797970
Alignment:
Q  21 aaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagtt 119  Q
    ||||||||||||||||||  ||||||| ||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||| |||    
T  53797836 aaaccaaagaaggaggaagaaaagaacagttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattctcggtt 53797931  T
Q  120 ttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |||||||||||||| ||| |||||||||||| |||||||    
T  53797932 ttggagtgaagaatgctaatcccgagctctctatttata 53797970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 289
Target Start/End: Complemental strand, 47045767 - 47045647
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||| || | |||| |    
T  47045767 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctatttcattgtgtttacattctaatgtctcctc 47045668  T
Q  269 aaactcactagtatactccaa 289  Q
    | |   |||||||||||||||    
T  47045667 ataacaactagtatactccaa 47045647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 13695364 - 13695503
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   |||||| |||| ||||||| ||||||    ||||||| |||| || |||||||||||| ||||||||||||||||    
T  13695364 tcgagaaaccaaagaaggaggaggaaaagaatggtttgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagagtattcgattct 13695459  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  13695460 cggttttggagtgaagaatcccattcccgagctctctatttata 13695503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 13710870 - 13711010
Alignment:
Q  16 tcgataaaccaaagaagg-aggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| || |||||  |||||| |||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  13710870 tcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 13710965  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  ||||||||||||||||| | |||||||||||||| |||||||    
T  13710966 ttggttttggagtgaagaatcccattcccgagctctctatttata 13711010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 47046195 - 47046060
Alignment:
Q  21 aaaccaaagaaggaggaaagaaa-gaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagt 118  Q
    |||||||||| ||||| |||||| |||||||||||||||| || | |    ||||||| |||| || |||||||||||| ||||  ||||||||||| ||    
T  47046195 aaaccaaagagggagggaagaaaagaacggttcgtcaacacaacctg----agggagatgagaaggggagaaaaccagagaagatgattcgattctcggt 47046100  T
Q  119 tttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||||||| | |||||||||||||| |||||||    
T  47046099 tttggagtgaagaatcccattcccgagctctctatttata 47046060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 13699067 - 13699113
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13699067 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 13699113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 21301371 - 21301325
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21301371 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21301325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 36357870 - 36357916
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  36357870 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 36357916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 40002798 - 40002844
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  40002798 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 40002844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 54346932 - 54346978
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  54346932 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 54346978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 8981823 - 8981777
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  8981823 catcaatggcgtaccctttcccaacaaaaataccattcttagtgatg 8981777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 13702945 - 13702991
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  13702945 catcagtggcgtaccctttcccaacaaaagtaccattcttagtgatg 13702991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 27711536 - 27711836
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27711536 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 27711635  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27711636 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 27711735  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  27711736 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 27711835  T
Q  316 c 316  Q
    |    
T  27711836 c 27711836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 37409419 - 37409145
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  37409419 tcgataaaccaaagaaggaggaaagaaaaaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 37409320  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37409319 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttatactagagtgtgtgatctacccgatgtgggacataaaattttcaat 37409220  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37409219 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 37409145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 27716656 - 27716930
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27716656 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattatc 27716755  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27716756 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaaatttcaat 27716855  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  27716856 tcacactttacactagtttctccatccttgtgcttacgttccaaaggctccacaaactcactagtatactccaag 27716930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 37404298 - 37404026
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||||||||||||||||    
T  37404298 tcgataaaccaaagaaggaggaaagaaataacggttcgtcaacacaaaccg--ggagggagaagagaggagagaaaaccagagaagagtattcgattctc 37404201  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404200 agttttggagtgaagaatactattcccgggctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 37404101  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37404100 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 37404026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 11251005 - 11250731
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11251005 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 11250906  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    | ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11250905 aattttggagtaaagaatactattcacgagctctcaatttataaggaggatttctactagagtgtgtgatctaaccgatgtgggacataaaattttcaat 11250806  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  11250805 tcacactttacactagtttctccatccttgtgtttacattccaaagactccacaaactcactggtatactccaag 11250731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 87 - 290
Target Start/End: Complemental strand, 34318043 - 34317840
Alignment:
Q  87 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 186  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34318043 agaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatc 34317944  T
Q  187 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34317943 tacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactc 34317844  T
Q  287 caag 290  Q
    ||||    
T  34317843 caag 34317840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 36684516 - 36684270
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  36684516 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtcaagaatactattc 36684420  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684419 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 36684320  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36684319 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 36684270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 5725365 - 5725512
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725365 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 5725464  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  5725465 aaaccaactagtatactccaagttttttccattatacactagtgttcc 5725512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 3585301 - 3585448
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3585301 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacattttacactagtttctccatccttgtgtttacattccaaaggctccac 3585400  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||  ||||||||||||||||       || ||||||||||||||||    
T  3585401 aaaccaactagtatactccaagttttttccaatatacactagtgttcc 3585448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 315
Target Start/End: Original strand, 5730771 - 5730917
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  5730771 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggtttcac 5730870  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||  |||||||||||||||        ||||||||||||||||||    
T  5730871 aaaccaactagtatactccaaattttttccattatacactagtgttc 5730917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 48246119 - 48245998
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  48246119 ctactagagtgtgtgatctacccaatgtgggacataaaaattttaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 48246020  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  48246019 ataacaactagtatactccaag 48245998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 5730307 - 5730446
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  5730307 tcgagaaaccaaagaaggaggaataaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 5730402  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | | |||||||||||| |||||||    
T  5730403 cggttttggagtgaagaatgcaaatcccgagctctctatttata 5730446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 3584803 - 3584942
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  3584803 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 3584898  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | | ||| |||||||| |||||||    
T  3584899 cggttttggagtgaagaatgcaaatcctgagctctctatttata 3584942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 168
Target Start/End: Complemental strand, 48246572 - 48246427
Alignment:
Q  20 taaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagt 118  Q
    |||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||| ||    
T  48246572 taaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattctcggt 48246477  T
Q  119 tttggagtgaagaatactattcccgagctctcaatttataaggaggattt 168  Q
    |||| |||||||||| | ||| ||||| |||| |||||||  ||||||||    
T  48246476 tttgtagtgaagaatcccatttccgaggtctctatttatagagaggattt 48246427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 50959069 - 50959010
Alignment:
Q  231 gtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50959069 gtttctccattcttgtgtttacattccaaaggctccacaaactcactagtatactccaag 50959010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 27715000 - 27715046
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  27715000 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 27715046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 37405954 - 37405908
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    ||||||||||||||||||||||||||||| || ||||||||||||||    
T  37405954 catcagtggcgtaccctttcccaacaaaattatcattcttagtgatg 37405908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 5728674 - 5728721
Alignment:
Q  320 catcagtggcgtaccctttcccaac-aaaaataccattcttagtgatg 366  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  5728674 catcagtggcgtaccctttcccaacaaaaaatatcattcttagtgatg 5728721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 22703245 - 22702948
Alignment:
Q  19 ataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22703245 ataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctcagt 22703146  T
Q  119 tttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22703145 tttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattca 22703046  T
Q  219 cactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  22703045 cactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 22702948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 21401954 - 21402254
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||     
T  21401954 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcaggagggagaagagaggagagaaaaccaaagaagagtattcgattctt 21402053  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    |||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21402054 agtttttgagtgatgaatactattcccaagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 21402153  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||       ||||||||||||||||||    
T  21402154 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactactatactccaagtttttttcattatacactagtgttc 21402253  T
Q  316 c 316  Q
    |    
T  21402254 c 21402254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 22698044 - 22697772
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22698044 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 22697948  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22697947 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 22697848  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  22697847 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 22697772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 29491118 - 29490812
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||| |||||||    
T  29491118 tcgataaaccaaagaaggaggaaaaaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagataaaatcagagaagagtatttgattctc 29491019  T
Q  116 agttttggagtgaag-aatact----attcc--cgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaat 208  Q
    ||||||||||||||  || |||    |||    | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29491018 agttttggagtgaaccaaaactgagtatttaaacca-ctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaat 29490920  T
Q  209 tttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacact 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       |||||||||||    
T  29490919 tttcaattcacactttacactagtttctccatccttgtgtttacattccaaaagctccacaaactcactagtatactccaagtttttttcattatacact 29490820  T
Q  309 agtgttcc 316  Q
    ||||||||    
T  29490819 agtgttcc 29490812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 2817548 - 2817401
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2817548 ctactagagtgtgtgatctacccaatgtgggacattaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 2817449  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  2817448 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 2817401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 34142781 - 34142928
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34142781 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34142880  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34142881 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34142928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 34155397 - 34155544
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  34155397 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 34155496  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34155497 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34155544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 6727924 - 6727777
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  6727924 ctactagagtgtgtgatctacccaatgtggaacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 6727825  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  6727824 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 6727777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 34376464 - 34376611
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  34376464 ctactagagtgtgttatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 34376563  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  34376564 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 34376611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 24190802 - 24190654
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaa-ttttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctcca 267  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| | ||||     
T  24190802 ctactagagtgtgtgatctacccaatgtgggacataaaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcct 24190703  T
Q  268 caaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    || |   ||||||||||||||||       || ||||||||||||||||    
T  24190702 cataacaactagtatactccaagtttttgccaatatacactagtgttcc 24190654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 31983475 - 31983622
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||| | |||| |    
T  31983475 ctactagagtgtgtgatctacccaatgcgggacataaaattttcaattcacactttacactaatttctacatcattgtgtttacattccaatgtctcctc 31983574  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  31983575 ataaaaactagtatactccaagtttttgccaatatacactagtgttcc 31983622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 31981765 - 31981904
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||||||||||||||    
T  31981765 tcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagagtattcgattct 31981860  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||||| | |||||||||||| |||||||    
T  31981861 cggttttggagtgaagaataccaatcccgagctctctatttata 31981904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 21396912 - 21396983
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggaga 87  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21396912 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggaga 21396983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 34376131 - 34376270
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||| |||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  34376131 tcgagaaaccaaagagggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 34376226  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  34376227 cggttttggagtgaagaatcccattcccgagctctctatttata 34376270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 24191266 - 24191126
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaa-cggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| |||||||||||| || ||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  24191266 tcgagaaaccaaagagggaggaaagaaaaaaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 24191171  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  ||||||||||||||||| | |||||||||||||| |||||||    
T  24191170 ttggttttggagtgaagaatcccattcccgagctctctatttata 24191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 24192363 - 24192223
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaa-cggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| |||||||||||| || ||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  24192363 tcgagaaaccaaagagggaggaaagaaaaaaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 24192268  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  ||||||||||||||||| | |||||||||||||| |||||||    
T  24192267 ttggttttggagtgaagaatcccattcccgagctctctatttata 24192223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 34142290 - 34142418
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaa-gaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  34142290 tcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 34142385  T
Q  114 tcagttttggagtgaagaatactattcccgagc 146  Q
    || ||||||||||||||||| | ||||||||||    
T  34142386 tcggttttggagtgaagaatccaattcccgagc 34142418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 34154906 - 34155034
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaa-gaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  34154906 tcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 34155001  T
Q  114 tcagttttggagtgaagaatactattcccgagc 146  Q
    || ||||||||||||||||| | ||||||||||    
T  34155002 tcggttttggagtgaagaatccaattcccgagc 34155034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 2818040 - 2817901
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||| |||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  2818040 tcgagaaaccaaacaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 2817945  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
      |||||||||| ||||||   |||||||||||||| |||||||    
T  2817944 tggttttggagtaaagaatctcattcccgagctctctatttata 2817901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 22699784 - 22699738
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  22699784 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 22699738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 6728246 - 6728193
Alignment:
Q  105 attcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||| |||||||    
T  6728246 attcgattctcggttttggagtgaagaatcccattcccgagctctctatttata 6728193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 3776 - 4050
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3776 tcgataaaccaaagaaggaggaaagaaaaaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 3875  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3876 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 3975  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3976 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 4050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 2120 - 2166
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2120 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 2166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 55129003 - 55129276
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55129003 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 55129102  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129103 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 55129202  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  55129203 tcacactttacactagtttctccat-cttgtgtttacattccaaaggctccacaaactcactagtatactccaag 55129276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 283
Target Start/End: Original strand, 17368932 - 17369199
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17368932 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaaccagagaagagtattcgattctc 17369031  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17369032 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 17369131  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtata 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  17369132 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaaccaactagtata 17369199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 20090463 - 20090191
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20090463 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 20090367  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20090366 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 20090267  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    |||  ||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  20090266 cctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 20090191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 41 - 316
Target Start/End: Complemental strand, 20095588 - 20095316
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20095588 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 20095492  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20095491 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 20095392  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    |||  ||||||||| |||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  20095391 cctgatgtttacatgccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 20095316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 15762831 - 15762585
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15762831 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 15762735  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15762734 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 15762635  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15762634 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 15762585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 15767992 - 15767746
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15767992 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 15767896  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15767895 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 15767796  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  15767795 ccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 15767746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 3481796 - 3481649
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3481796 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 3481697  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||||||||||||||||||||       |||||||||||||||||||    
T  3481696 aaactcactagtatactccaagtttttttcattatacactagtgttcc 3481649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 34128558 - 34128437
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34128558 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 34128459  T
Q  269 aaactcactagtatactccaag 290  Q
    |||   ||||||||||||||||    
T  34128458 aaatcaactagtatactccaag 34128437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 17358566 - 17358686
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17358566 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacacta-tttctccatccttgtgtttacattccaaaggctccac 17358664  T
Q  269 aaactcactagtatactccaag 290  Q
    ||||  ||||||||| ||||||    
T  17358665 aaaccaactagtataatccaag 17358686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 30338247 - 30338126
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30338247 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactaatttctccatccttgtgtttacattccaaaggctccac 30338148  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  30338147 ataacaactagtatactccaag 30338126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 30341351 - 30341204
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30341351 ctactagagtgtgtgatctacctaatgtgggccataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 30341252  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  30341251 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 30341204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 54271312 - 54271433
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  54271312 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttagactagtttctccatccttgtgtttacattccaaaggctccac 54271411  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||| ||||    
T  54271412 ataacaactagtatacttcaag 54271433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 3476339 - 3476249
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 259  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  3476339 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaa 3476249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 4117097 - 4117007
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 259  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||    
T  4117097 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatcattgtgtttacattccaa 4117007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 54270846 - 54270986
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaa-gaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  54270846 tcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 54270941  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    || ||||||||||||||||| | |||||||||||||| |||||||    
T  54270942 tcggttttggagtgaagaatcccattcccgagctctctatttata 54270986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 17358040 - 17358179
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||| |||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  17358040 tcgagaaaccaaagaaggaagaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 17358135  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||||||||||| | | |||||||||||| |||||||    
T  17358136 cagttttggagtgaagaatgcaaatcccgagctctctatttata 17358179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 3482290 - 3482166
Alignment:
Q  31 aggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagttttggagtgaa 129  Q
    ||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||||||||| ||||||||||| |||||||||||||    
T  3482290 aggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagataagaggattcgattctcggttttggagtgaa 3482195  T
Q  130 gaatactattcccgagctctcaatttata 158  Q
    |||| | |||||||||||||| |||||||    
T  3482194 gaatcccattcccgagctctctatttata 3482166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 4117485 - 4117345
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaa-gaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||||||||| |||||| |||||||||||||||| ||||||    ||||||| |||| || |||||||||| | ||||| |||||||||    
T  4117485 tcgagaaaccaaagaaggagggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcgattc 4117390  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    || ||||||||||||||||| | |||||||||||||| |||||||    
T  4117389 tcggttttggagtgaagaatcccattcccgagctctctatttata 4117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 34129062 - 34128923
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||| |||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  34129062 tcgagaaaccaaagaaggatgaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 34128967  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||||||||||||| | | |||||| ||||| |||||||    
T  34128966 cagttttggagtgaagaatgcaaatcccgacctctctatttata 34128923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 10321645 - 10321784
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagag-aggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| |||||    |||||||| ||| ||| ||||||||| || ||||| |||| |||||    
T  10321645 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaacc----gagggagatgagaaggggagaaaacctgagaagaggattcaattct 10321740  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | | |||||||||||| |||||||    
T  10321741 cggttttggagtgaagaatgcaaatcccgagctctctatttata 10321784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 3476839 - 3476699
Alignment:
Q  16 tcgataaaccaaagaagg-aggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| || |||||  |||||| |||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  3476839 tcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 3476744  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |   |||||||||||||||| | |||||||||||||| |||||||    
T  3476743 ttgtttttggagtgaagaatcccattcccgagctctctatttata 3476699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 3478485 - 3478439
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3478485 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 3478439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 15764557 - 15764511
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15764557 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15764511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 17362634 - 17362680
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17362634 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17362680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 17367276 - 17367322
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17367276 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 17367322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 20092188 - 20092142
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  20092188 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 20092142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 30338595 - 30338506
Alignment:
Q  70 gagggagaagaga-ggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |||||||| |||| || |||||||||||| ||||| ||||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30338595 gagggagatgagaaggggagaaaaccagagaagaggattcgattctcggttttggagtgaagaatccaaatcccgagctctctatttata 30338506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 158
Target Start/End: Complemental strand, 30341771 - 30341720
Alignment:
Q  107 tcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||||| ||||||||||||||||| | | |||||||||||| |||||||    
T  30341771 tcgattctcggttttggagtgaagaatcccaatcccgagctctctatttata 30341720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 133
Target Start/End: Original strand, 10321816 - 10321861
Alignment:
Q  88 gaaaaccagataagagtattcgattctcagttttggagtgaagaat 133  Q
    |||||||||| ||||| ||||||||||| ||||||| |||||||||    
T  10321816 gaaaaccagagaagaggattcgattctcggttttggggtgaagaat 10321861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 40392532 - 40392832
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || ||||||||||||||    
T  40392532 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacacaaaccgcgggagggagaagagaggagagaaaatcagagaaaagtattcgattctc 40392631  T
Q  116 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40392632 agttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaat 40392731  T
Q  216 tcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttc 315  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
T  40392732 tcacactttacactagtttctccatccttatgtttacattgcaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttc 40392831  T
Q  316 c 316  Q
    |    
T  40392832 c 40392832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 40518354 - 40518075
Alignment:
Q  16 tcgataaaccaaa-gaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattct 114  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||    
T  40518354 tcgataaaccaaaagaaggaggaa-gaaagaacggttcgtcaacacaaaccgctggagggagaagagaggagagaaaacaagagaagagtattcgattct 40518256  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaattt----ataaggaggatttctactagagtgtgtgatcta-cccgatgtgggacataaaatt 209  Q
    |||||||||||||||||||||||||| ||||||||||||||    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40518255 cagttttggagtgaagaatactattcacgagctctcaatttattaataaggaggatttctactagagtgtgtgatctaccccgatgtgggacataaaatt 40518156  T
Q  210 ttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  40518155 ttcaattcacactttacactagtttctccatccttgtgtttatattccaaaggctccacaaactcactattatactccaag 40518075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 42728421 - 42728175
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42728421 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 42728325  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42728324 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 42728225  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42728224 ccttgtgtttacattccaaaggctccacaaactcactagtaaactccaag 42728175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 86 - 289
Target Start/End: Complemental strand, 42723210 - 42723007
Alignment:
Q  86 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 185  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42723210 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 42723111  T
Q  186 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42723110 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtaaact 42723011  T
Q  286 ccaa 289  Q
    ||||    
T  42723010 ccaa 42723007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 44096596 - 44096842
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  44096596 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtaaagaatactattc 44096692  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44096693 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 44096792  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  44096793 ccttttgtttacattccaaatgctccacaaactcactagtatactccaag 44096842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 44754352 - 44754161
Alignment:
Q  99 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44754352 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44754253  T
Q  199 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44754252 gacataaaattttcaattcacactttacactagtttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44754161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 44759518 - 44759327
Alignment:
Q  99 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44759518 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgg 44759419  T
Q  199 gacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  44759418 gacataaaattttcaattcacactttacactaatttctccatccttatgtttacatgccaaaggctccacaaactcactagtatactccaag 44759327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 99 - 287
Target Start/End: Original strand, 40519929 - 40520122
Alignment:
Q  99 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttat----aaggaggatttctactagagtgtgtgatctaccc-ga 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||| ||    
T  40519929 aagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttattcataaggaggatttctactagagtgtgtgatctaccccga 40520028  T
Q  194 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40520029 tgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatactcc 40520122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 4163042 - 4162895
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4163042 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 4162943  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||  ||||||||||||||||       |||||||||| ||||||||    
T  4162942 aaaccaactagtatactccaagttttttccattatacaccagtgttcc 4162895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 28751168 - 28751021
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28751168 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 28751069  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  28751068 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 28751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 4163470 - 4163331
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  4163470 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 4163375  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | | |||||||||||| |||||||    
T  4163374 cggttttggagtgaagaatgcaaatcccgagctctctatttata 4163331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 28751622 - 28751483
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||| | ||||| ||||||||||    
T  28751622 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcgattct 28751527  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | |||||||||||||||||   |||||||||||||| |||||||    
T  28751526 cggttttggagtgaagaatctcattcccgagctctctatttata 28751483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 42724986 - 42724940
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42724986 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 42724940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 44756138 - 44756092
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  44756138 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 44756092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 41 - 316
Target Start/End: Original strand, 33238296 - 33238568
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33238296 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 33238392  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33238393 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 33238492  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  33238493 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaagtttttttcattatacactagtgttcc 33238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 47994094 - 47994340
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47994094 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 47994190  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994191 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 47994290  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47994291 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 47994340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 86 - 316
Target Start/End: Original strand, 33243515 - 33243745
Alignment:
Q  86 gagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 185  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33243515 gagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataaggaggatttctactagagtgtgtgat 33243614  T
Q  186 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactcactagtatact 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33243615 ctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatgccaaaggctccacaaactcactagtatact 33243714  T
Q  286 ccaagnnnnnnncattatacactagtgttcc 316  Q
    |||||       |||||||||||||||||||    
T  33243715 ccaagtttttttcattatacactagtgttcc 33243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 47999269 - 47999515
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47999269 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 47999365  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47999366 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccat 47999465  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  47999466 ccttatgtttacattccaaaggctccacaaactcactaatatactccaag 47999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 21080468 - 21080321
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21080468 ctactagagtgtgtgatctacccaacgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 21080369  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  21080368 aaaccaactagtatactccaagttttttccattatacactagtgttcc 21080321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 2234099 - 2233978
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2234099 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttcttcatccttgtgtttacattccaaaggctccac 2234000  T
Q  269 aaactcactagtatactccaag 290  Q
    ||||  ||||||||||||||||    
T  2233999 aaaccaactagtatactccaag 2233978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 32212112 - 32211965
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  32212112 ctactagagtgtgtgatctacccaatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaagtctcaac 32212013  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  32212012 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 32211965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 42572600 - 42572747
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  42572600 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 42572699  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42572700 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42572747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 17496100 - 17496221
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17496100 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17496199  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  17496200 ataacaactagtatactccaag 17496221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 169 - 290
Target Start/End: Complemental strand, 17557114 - 17556993
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  17557114 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 17557015  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  17557014 ataacaactagtatactccaag 17556993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 12935084 - 12935231
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  12935084 ctactaaagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 12935183  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  12935184 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12935231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 19309023 - 19308876
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||    
T  19309023 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacatttcaaagtctccac 19308924  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  19308923 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 19308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 47176643 - 47176496
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  47176643 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 47176544  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  47176543 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 47176496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 2234523 - 2234384
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  2234523 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 2234428  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||||||| |||||||||||| |||||||    
T  2234427 cggttttggagtgaagaatactaatcccgagctctctatttata 2234384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 16538813 - 16538699
Alignment:
Q  176 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 275  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16538813 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16538714  T
Q  276 ctagtatactccaag 290  Q
    |||||||||||||||    
T  16538713 ctagtatactccaag 16538699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 290
Target Start/End: Original strand, 16626849 - 16626963
Alignment:
Q  176 agtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccacaaactca 275  Q
    |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||| |   |    
T  16626849 agtgtgtgatctactcaatatgggacataaaattttcaattcacactttacactagtttctacatccttgtgtctacattccaaagtctccacataacaa 16626948  T
Q  276 ctagtatactccaag 290  Q
    |||||||||||||||    
T  16626949 ctagtatactccaag 16626963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 316
Target Start/End: Original strand, 43893542 - 43893689
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||| |    
T  43893542 ctactagagtgtgtgatctacccaatgagggacataaaattttcaattcacactttacgctagtttctacatcattgtgtttacattccaatgtctcctc 43893641  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  43893642 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 43893689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 12934599 - 12934738
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||| ||||||||||||||  |||||||||||| |||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  12934599 tcgagaaaacaaagaaggaggaagaaaagaacggttcatcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 12934694  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  12934695 cggttttggagtgaagaatcccattcccgagctctctatttata 12934738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 42572147 - 42572286
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  42572147 tcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 42572242  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | ||||||||| |||| |||||||    
T  42572243 cggttttggagtgaagaatcccattcccgagttctctatttata 42572286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 17495610 - 17495744
Alignment:
Q  21 aaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagtt 119  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||| |||||| |||    
T  17495610 aaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggcgagaaaaccagagaagaggattcaattctcggtt 17495705  T
Q  120 ttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||| |||||| | |||||||||||||| |||||||    
T  17495706 ttggagtaaagaatcccattcccgagctctctatttata 17495744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 17557604 - 17557470
Alignment:
Q  21 aaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagtt 119  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||| |||||| |||    
T  17557604 aaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggcgagaaaaccagagaagaggattcaattctcggtt 17557509  T
Q  120 ttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||| |||||| | |||||||||||||| |||||||    
T  17557508 ttggagtaaagaatcccattcccgagctctctatttata 17557470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 158
Target Start/End: Complemental strand, 21080927 - 21080793
Alignment:
Q  21 aaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattctcagtt 119  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||||    ||| ||| |||| || |||||||||||| ||||| |||||||||||||||    
T  21080927 aaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----aggaagatgagaaggggagaaaaccagagaagaggattcgattctcagtt 21080832  T
Q  120 ttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||| |||||||||| | | |||||||||||| |||||||    
T  21080831 ttgaagtgaagaatgcaaatcccgagctctctatttata 21080793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 19309504 - 19309365
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||| ||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||| ||||||    
T  19309504 tcgagaaaccaaagaaggaggaggaaaagaacagttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggatttgattct 19309409  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  19309408 cggttttggagtgaagaatcccattcccgagctctctatttata 19309365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 16539305 - 16539166
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagag-gagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||| ||||||    ||||||| ||||  | |||||||||||| ||||| |||  |||||    
T  16539305 tcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccg----agggagatgagaatgggagaaaaccagagaagaggatttaattct 16539210  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  16539209 cggttttggagtgaagaatcccattcccgagctctctatttata 16539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 16626357 - 16626496
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagagag-gagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||| ||||||||||| ||||||    ||||||| ||||  | |||||||||||| ||||| |||  |||||    
T  16626357 tcgagaaaccaaagaaggaggaagaaaagaactgttcgtcaacacaaaccg----agggagatgagaatgggagaaaaccagagaagaggatttaattct 16626452  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | |||||||||||||| |||||||    
T  16626453 cggttttggagtgaagaatcccattcccgagctctctatttata 16626496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 47544828 - 47544749
Alignment:
Q  237 ccatccttgtgtttacattccaaaggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||    
T  47544828 ccatccttgtgtttacattccaaaggctccacaaactctctagtatactccaagtttttttcattatacactagtgttcc 47544749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 43893070 - 43893210
Alignment:
Q  16 tcgataaaccaaagaagg-aggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| || |||||  |||||||| |||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  43893070 tcgagaaaccaaagaggggaggaagaaaagaacgattcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 43893165  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||  |||||||||||||||| | |||||||||||||| |||||||    
T  43893166 tcgattttggagtgaagaatcccattcccgagctctctatttata 43893210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 32212547 - 32212419
Alignment:
Q  16 tcgataaaccaaagaa-ggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| ||||||||||| |||||||  |||||||||||| |||||| ||||||    ||||||| |||| || ||||||| |||| ||||| |||||||||    
T  32212547 tcgagaaaccaaagaaaggaggaagaaaagaacggttcatcaacacaaaccg----agggagatgagaaggggagaaaatcagagaagaggattcgattc 32212452  T
Q  114 tcagttttggagtgaagaatactattcccgagc 146  Q
    || ||||||||||||||||| | ||||||||||    
T  32212451 tcggttttggagtgaagaatcccattcccgagc 32212419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 33241732 - 33241778
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  33241732 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 33241778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 47997529 - 47997575
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  47997529 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 47997575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 70 - 158
Target Start/End: Complemental strand, 47176993 - 47176904
Alignment:
Q  70 gagggagaagaga-ggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |||||||| |||| || |||||||||||| ||||| |||||||| || |||||||||||||||||   |||||||||||||| |||||||    
T  47176993 gagggagatgagaaggggagaaaaccagagaagaggattcgattatcggttttggagtgaagaatctcattcccgagctctctatttata 47176904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 31839 - 32085
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  31839 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattc 31935  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31936 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 32035  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32036 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 32085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 26667 - 26913
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26667 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagataagagtattcgattctcagttttggtgtgaagaatactattc 26763  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26764 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 26863  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26864 ccttttgtttacattccaaaggctccacaaactcactagtatactccaag 26913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 30102 - 30148
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  30102 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 30148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0055 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0055
Description:

Target: scaffold0055; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 3318 - 3564
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3318 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 3414  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3415 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctaccggatgtgggacataaaattttcaattcacactttacactagtttctccat 3514  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3515 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 3564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0052 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0052
Description:

Target: scaffold0052; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Complemental strand, 81217 - 80971
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  81217 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 81121  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  81120 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctaccggatgtgggacataaaattttcaattcacactttacactagtttctccat 81021  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  81020 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 80971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 32010820 - 32011066
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32010820 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 32010916  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32010917 ccgagctctcaatttataaggaggatttctactagagtgtatgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 32011016  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32011017 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 32011066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 41 - 290
Target Start/End: Original strand, 32015994 - 32016240
Alignment:
Q  41 aaagaacggttcgtcaacataaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattc 140  Q
    |||||||| |||||||||| ||| ||||||||  |  ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32015994 aaagaacgattcgtcaacacaaatcgcgggag--atgaga-aggggagaaaaccagagaagagtattcgattctcagttttggagtgaagaatactattc 32016090  T
Q  141 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32016091 ccgagctctcaatttataaggaggatttctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccat 32016190  T
Q  241 ccttgtgtttacattccaaaggctccacaaactcactagtatactccaag 290  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32016191 ccttgtgtttacattccaaaggctccacaaattcactagtatactccaag 32016240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 61 - 316
Target Start/End: Complemental strand, 2165650 - 2165394
Alignment:
Q  61 aaaccgcgggagggagaagagaggagagaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctcaatttataag 160  Q
    |||||||||||||||||||||| |||||||||| ||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2165650 aaaccgcgggagggagaagagatgagagaaaactagagaagagcatttgattctcaattttggagtgaagaatactattcccgagctctcaatttataag 2165551  T
Q  161 gaggatttctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatt-ccaa 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2165550 gaggatttctactagagtgtgtgatctacccgatgtgagacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattcccaa 2165451  T
Q  260 aggctccacaaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    || |||||||||||||||||||||||||||        |||||||||||||||||||    
T  2165450 agactccacaaactcactagtatactccaaaattttttcattatacactagtgttcc 2165394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 43998693 - 43998546
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43998693 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacatttcaaaggctccac 43998594  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    ||||  ||||||||||||||||       |||||||||||||||||||    
T  43998593 aaaccaactagtatactccaagtttttttcattatacactagtgttcc 43998546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 17955281 - 17955134
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  17955281 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacacttcacactagtttctccatccttgtgtttacattccaaaggctccac 17955182  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    |||   |||||||||||| |||       |||||||||||||||||||    
T  17955181 aaaacaactagtatactctaagtcttttccattatacactagtgttcc 17955134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 24885324 - 24885445
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  24885324 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatccttgtgtttacattccaaagtctccac 24885423  T
Q  269 aaactcactagtatactccaag 290  Q
    | |   ||||||||||||||||    
T  24885424 ataacaactagtatactccaag 24885445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 42513995 - 42513848
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| | ||||||    
T  42513995 ctactagagtgtgtgatctatccaatgtgggacataaaattttcaattcacactttacactattttctacatccttgtgtttacattccaatgtctccac 42513896  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  42513895 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 42513848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 24884915 - 24885064
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| ||||||||||    
T  24884915 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattct 24885010  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 168  Q
    | ||||||||||||||||| | |||||||||||||| |||||||  ||||||||    
T  24885011 cggttttggagtgaagaattccattcccgagctctctatttatagagaggattt 24885064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 21641273 - 21641184
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 259  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||| ||||||||||||    
T  21641273 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactag-atctacatccttgtatttacattccaa 21641184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21641659 - 21641520
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagag-aggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| ||| |||||||||| | ||||| ||||||||||    
T  21641659 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaacc----gagggagatgagaaggggagaaaaccaaagaagaggattcgattct 21641564  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641563 cgattttggagtgaagaatcccattcccgaggtctctatttata 21641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21642034 - 21641895
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagag-aggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| ||| |||||||||| | ||||| ||||||||||    
T  21642034 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaacc----gagggagatgagaaggggagaaaaccaaagaagaggattcgattct 21641939  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  |||||||||||||||| | ||||||||| |||| |||||||    
T  21641938 cgattttggagtgaagaatcccattcccgaggtctctatttata 21641895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21642409 - 21642270
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagag-aggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  |||||||||||||||||||||||||    |||||||| ||| ||| |||||||||| | ||||| ||||||||||    
T  21642409 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacataaacc----gagggagatgagaaggggagaaaaccaaagaagaggattcgattct 21642314  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642313 cgattttggagtgaagaatcccattcccgaggtctctatttata 21642270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21643159 - 21643020
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||| | ||||| ||||||||||    
T  21643159 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcgattct 21643064  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643063 cggttttggagtgaagaatcccattcccgaggtctctatttata 21643020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21643974 - 21643835
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||| |||||||||||| |||||| ||||||    ||||||| | || || |||||||||||| ||||| ||||||||||    
T  21643974 tcgagaaaccaaagaaggaggaaaaaaagaacggttcatcaacacaaaccg----agggagatgggaaggggagaaaaccagagaagaggattcgattct 21643879  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643878 cggttttggagtgaagaatcccattcccgaggtctctatttata 21643835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21642784 - 21642645
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||| | ||||| ||||||||||    
T  21642784 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccaaagaagaggattcgattct 21642689  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  |||||||||||||||| | ||||||||| |||| |||||||    
T  21642688 cgattttggagtgaagaatcccattcccgaggtctctatttata 21642645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 21643534 - 21643395
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||| ||    ||||||| |||| || |||||||||| | ||||| ||||||||||    
T  21643534 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaatcg----agggagatgagaaggggagaaaaccaaagaagaggattcgattct 21643439  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | ||||||||||||||||| | ||||||||| |||| |||||||    
T  21643438 cggttttggagtgaagaatcccattcccgaggtctctatttata 21643395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 43999123 - 43998984
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagag-aggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| |||||    |||||||| ||| ||| ||||||| |||| ||||| ||||||||||    
T  43999123 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaacc----gagggagatgagaaggggagaaaatcagagaagaggattcgattct 43999028  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    ||||||| |||| ||||||   | |||||||||||| |||||||    
T  43999027 cagttttagagtaaagaatgtaaatcccgagctctctatttata 43998984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 21645620 - 21645574
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21645620 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 21645574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 32014255 - 32014301
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  32014255 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 32014301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 42514245 - 42514182
Alignment:
Q  87 agaaaaccagataagagtattcgattctcagttttggagtgaagaatactattcccgagctctc 150  Q
    ||||||||||| ||||| ||||||||||| |||||||||||||||||   ||||||||||||||    
T  42514245 agaaaaccagagaagaggattcgattctcggttttggagtgaagaatctcattcccgagctctc 42514182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 17955682 - 17955626
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggag 72  Q
    |||| ||||||||||||||||||  |||||||| |||||||||| |||||| |||||    
T  17955682 tcgagaaaccaaagaaggaggaagaaaagaacgattcgtcaacacaaaccgagggag 17955626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 19434003 - 19434043
Alignment:
Q  322 tcagtggcgtaccctttcccaacaaaaataccattcttagt 362  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19434003 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19434043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Original strand, 19570152 - 19570192
Alignment:
Q  322 tcagtggcgtaccctttcccaacaaaaataccattcttagt 362  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19570152 tcagtggcgtaccctttcccaacaaaaaccccatccttagt 19570192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 8681 - 8534
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8681 ctactagagtgtgtgatctacccaatgtgggacataaaattttaaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 8582  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  8581 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 8534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 9101 - 8962
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||| |||||||||  ||||||| ||||||||||| ||||||    ||||||| |||| || |||||||| ||| ||||| ||||||||||    
T  9101 tcgagaaaccaaacaaggaggaagaaaagaacagttcgtcaacacaaaccg----agggagatgagaaggggagaaaactagagaagaggattcgattct 9006  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  |||||||||||||||| | |||||||||||||| |||||||    
T  9005 cgtttttggagtgaagaatcccattcccgagctctctatttata 8962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 83; Significance: 3e-39; HSPs: 5)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 13133 - 12986
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaaaggctccac 268  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| |    
T  13133 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttacactagtttctacatcattgtgtttacattccaatgtctcctc 13034  T
Q  269 aaactcactagtatactccaagnnnnnnncattatacactagtgttcc 316  Q
    | |   ||||||||||||||||       || ||||||||||||||||    
T  13033 ataacaactagtatactccaagtttttgccaatatacactagtgttcc 12986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 18590 - 18500
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttacactagtttctccatccttgtgtttacattccaa 259  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||    
T  18590 ctactagagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttatactagtttctacatcattgtgtttacattccaa 18500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 19085 - 18946
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| |||||||||||||||||   ||||||||||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||||||||||||||    
T  19085 tcgagaaaccaaagaaggaggaggaaaagaacggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagagtattcgattct 18990  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    | |||||||||| |||||||| | ||| |||||||| |||||||    
T  18989 cggttttggagtaaagaataccaatcctgagctctctatttata 18946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 13633 - 13493
Alignment:
Q  16 tcgataaaccaaagaagg-aggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattc 113  Q
    |||| |||||||||| || |||||  |||||| |||||||||||| ||||||    ||||||| |||| || |||||||||||| ||||| |||||||||    
T  13633 tcgagaaaccaaagaggggaggaagaaaagaatggttcgtcaacacaaaccg----agggagatgagaaggggagaaaaccagagaagaggattcgattc 13538  T
Q  114 tcagttttggagtgaagaatactattcccgagctctcaatttata 158  Q
    |  ||||||||||||||||| | |||||||||||||| |||||||    
T  13537 ttggttttggagtgaagaatcccattcccgagctctctatttata 13493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Complemental strand, 15279 - 15233
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15279 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 16 - 168
Target Start/End: Original strand, 37212 - 37361
Alignment:
Q  16 tcgataaaccaaagaaggaggaaagaaagaacggttcgtcaacataaaccgcgggagggagaagaga-ggagagaaaaccagataagagtattcgattct 114  Q
    |||| ||||||||||||||||||  ||||||||||||||||||| ||||||    ||| ||| |||| || |||||||||||| ||||| ||||||||||    
T  37212 tcgagaaaccaaagaaggaggaagaaaagaacggttcgtcaacacaaaccg----aggaagatgagaaggggagaaaaccagagaagaggattcgattct 37307  T
Q  115 cagttttggagtgaagaatactattcccgagctctcaatttataaggaggattt 168  Q
    | |||||||||||||||||   |||||||||||||| |||||||  ||||||||    
T  37308 cggttttggagtgaagaatctcattcccgagctctctatttatagagaggattt 37361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 37654 - 37712
Alignment:
Q  169 ctactagagtgtgtgatctacccgatgtgggacataaaattttcaattcacactttaca 227  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37654 ctactggagtgtgtgatctacccaatgtgggacataaaattttcaattcacactttaca 37712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 320 - 366
Target Start/End: Original strand, 15542 - 15588
Alignment:
Q  320 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  15542 catcagtggcgtaccctttcccaacaaaaataccattcttagtgatg 15588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University