View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13588_low_2 (Length: 893)
Name: NF13588_low_2
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 783; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 783; E-Value: 0
Query Start/End: Original strand, 11 - 874
Target Start/End: Complemental strand, 21244530 - 21243668
Alignment:
| Q |
11 |
catcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaataattttgttgtccatcacggtgtattta |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244530 |
catcatcaggaaatctattgaaataagtaactcaaatatgaaatattaatagagaagtatcaattgaaaaataattttgttgtccatcacggtgtattta |
21244431 |
T |
|
| Q |
111 |
tatggtgtgcgatttcattttttattagctattccgctctctctgtgtcaaatcaatagttataagcgatgatagttttatacctcaaactaaaactatc |
210 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21244430 |
tatggtgtgcgatttcattttttattagttgttccgctctctctgtgtcaaatcaatagttataagtgatgatagttttatacctcaaactaaaactatc |
21244331 |
T |
|
| Q |
211 |
atgcaagnnnnnnnacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacctggttaatttc |
310 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
21244330 |
atgcaagtttttttacttacgggacaacgacagcatcttgtatttcagggtgagaaacgagaagatcttcaagttctgctggtgcaacctggttaatttc |
21244231 |
T |
|
| Q |
311 |
aaaaacacaaatattacatgatgtgaaattccatgcataattaatcattttcacacatagtaaaagggttataaacaaataatcactcaaaaagaggagc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21244230 |
aaaaacacaaatattacatgatgtgaaattccctgcataattaatcattttaacacatagtaaaagggttataaacaaataatcactcaaaaagaggagc |
21244131 |
T |
|
| Q |
411 |
ttaagaaagattaatgagtaagattactacaattcacacattaagaataataattaggggcatggagcatttgtttaatgcaaccaataccatatcatct |
510 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21244130 |
ttaagaaagattaatgagtaaaattactacaattgacacattaagaataataatttgggtcatggagcatttgtttaatgcaaccaataccatatcatct |
21244031 |
T |
|
| Q |
511 |
ttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaataatgtatagacgaaaatgttactttagttactgatatcattttaga |
610 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21244030 |
ttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcagataatgtatagacgaaaatgttactttagttactgatatcattttaga |
21243931 |
T |
|
| Q |
611 |
ttacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccggtatgta |
710 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
21243930 |
ttacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccggtatgca |
21243831 |
T |
|
| Q |
711 |
cccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaatgtacat |
810 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21243830 |
cccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaatgtacat |
21243731 |
T |
|
| Q |
811 |
aatacaaataatatgatggcattatgttggaaaaggaccaagaatacatgttgcacgacatgac |
874 |
Q |
| |
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| T |
21243730 |
aatacaaataatatgatggcattatgttgg-aaaggaccaagaatacatgttgcacgacatgac |
21243668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 372 - 821
Target Start/End: Complemental strand, 21259487 - 21259030
Alignment:
| Q |
372 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaagattaatga-------gtaagattactacaattcacacattaagaataataat |
464 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||| ||||||||||||||||||| |
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| T |
21259487 |
aaaagggttataaacaaataatcactcaaaaagaggagcttaagaaatattaattattaataagtaaaattactacaattgacacattaagaataataat |
21259388 |
T |
|
| Q |
465 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagttaacataatagtgacaaagatttgtctaagatttcaaat |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||| |||||||||| || |
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|
| T |
21259387 |
taggggcatggagcatttgtttaatgcaaccaataccatatcatctttccaatgctcaagtaaacataactgtgacaaggatttgggtaagatttcagat |
21259288 |
T |
|
| Q |
565 |
aatgtatag---acgaaaatgttactttagttactgatatcattttagattacatacctgataacctttgtatttgatcagttctttgatacgatcaaca |
661 |
Q |
| |
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|||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||| || |||||||||||| |
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| T |
21259287 |
aatgaataataaacgaaaatgttactttagttact-atatcattttagattacataccttataacctttgtacttgatcagttccttcatacgatcaaca |
21259189 |
T |
|
| Q |
662 |
acataaagtcggccaatctcatcaaaatatccaagatctccggtatgtacccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaat |
761 |
Q |
| |
|
||||||||| | || |||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||||||||||||||| ||||||| |||| |
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| T |
21259188 |
acataaagttgtccgatctcatcaaaatatccaagatctcctgtatgtacgcacccctcgttacctaaagtttgttttgtggcctctagattgttataat |
21259089 |
T |
|
| Q |
762 |
aacctgaaatatttgtataggaaaagtttcatatgggaaaaatgtacataatacaaataa |
821 |
Q |
| |
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|||||||| || |||||||||||||||||||||||| | | || |||||||||||||||| |
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| T |
21259088 |
aacctgaatta-ttgtataggaaaagtttcatatggaagatatttacataatacaaataa |
21259030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 713 - 804
Target Start/End: Complemental strand, 21254887 - 21254797
Alignment:
| Q |
713 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatatgggaaaaat |
804 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
21254887 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatattggaaaaat |
21254797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 713 - 795
Target Start/End: Complemental strand, 21250746 - 21250665
Alignment:
| Q |
713 |
cacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaatatttgtataggaaaagtttcatat |
795 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
21250746 |
cacccctcactatctaaagtttgttttgtggcctctcgattgttataataacctgaaata-ttgtataggaaaagtttcatat |
21250665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 118
Target Start/End: Complemental strand, 21259731 - 21259619
Alignment:
| Q |
11 |
catcatcaggaaatctattgaaataagtaactcaaatatgaaatattagtagagaagtatcaattgaaaaa-----taattttgttgtccatcacggtgt |
105 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| || | ||||| |||| || |||||||||||||| | | ||||||||||| || ||| | |
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| T |
21259731 |
catcatcaggaaatctatagcaataagtaactcaaatgtgtattattaatagaaaaatatcaattgaaaaacagttttaatttgttgtccaccatggtat |
21259632 |
T |
|
| Q |
106 |
atttatatggtgt |
118 |
Q |
| |
|
||||||||||||| |
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|
| T |
21259631 |
atttatatggtgt |
21259619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 21259573 - 21259498
Alignment:
| Q |
236 |
aacgacagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacctggttaatttca |
311 |
Q |
| |
|
||||||| ||||||||||||| || |||||||| || |||||||||||| ||||||| ||||||| |||| ||||| |
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|
| T |
21259573 |
aacgacaacatcttgtatttctggatgagaaacaagaagatcttcaagtgctgctggcgcaacctagttattttca |
21259498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 610 - 770
Target Start/End: Original strand, 40806761 - 40806921
Alignment:
| Q |
610 |
attacatacctgataacctttgtatttgatcagttctttgatacgatcaacaacataaagtcggccaatctcatcaaaatatccaagatctccggtatgt |
709 |
Q |
| |
|
|||||||||||| | ||||| || |||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||||| |||||| |
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| T |
40806761 |
attacatacctggaaccctttatacttgatcagttctttgatacggtcaacgacaaaaagatttccatcctcatcaaaatatccaagatctcccgtatgt |
40806860 |
T |
|
| Q |
710 |
acccacccctcattatctaaagtttgttttgtggcctctcgattgttgtaataacctgaaa |
770 |
Q |
| |
|
|||||||| | ||||||| ||| | ||| ||||| | ||||||||||||||||||||| |
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| T |
40806861 |
acccacccttttttatctatagtcaatcttgaggcctgtggattgttgtaataacctgaaa |
40806921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 40806385 - 40806445
Alignment:
| Q |
240 |
acagcatcttgtatttcagggtgagaaacgagtagatcttcaagttctgctggtgcaacct |
300 |
Q |
| |
|
|||||||| |||||||||| |||||||| || ||| |||||||||||||||||||||||| |
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|
| T |
40806385 |
acagcatcaagtatttcaggatgagaaacaagaagaccttcaagttctgctggtgcaacct |
40806445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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