View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_21 (Length: 321)
Name: NF13588_low_21
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 1739258 - 1738952
Alignment:
| Q |
1 |
ttttatgacacatgtaattgatttctcatttcnnnnnnncataagaaaatatctgtaagttagtagttttattactaatttacatatctcttgtttgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
1739258 |
ttttatgacacatgtaattgatttctcatttctttttttcataagaaaatatctgtaagttagtagtgttattact---ttacatatctcttgtttgaaa |
1739162 |
T |
|
| Q |
101 |
acttagttcaccagatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatggtaatagaaaaagtttaggagg |
200 |
Q |
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| T |
1739161 |
acttagttcaccaaatgaattacctactcgaaactgatatctttatacatg----aattgaacttgtttacagatataataatagaaaaagtttaggagg |
1739066 |
T |
|
| Q |
201 |
aatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaatact |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1739065 |
aatagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatact |
1738966 |
T |
|
| Q |
301 |
tatgtgatgatgtc |
314 |
Q |
| |
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|||||||| ||||| |
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| T |
1738965 |
tatgtgatcatgtc |
1738952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 314
Target Start/End: Complemental strand, 1717667 - 1717455
Alignment:
| Q |
98 |
aaaacttagttcaccagatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatggtaatagaaaaagtttagg |
197 |
Q |
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||||||| ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
1717667 |
aaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatg----aattgaacttgtttacagatacagtcatagaaaaagtttagg |
1717572 |
T |
|
| Q |
198 |
aggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaat |
297 |
Q |
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||||||||| ||||||||||||||||| |||||||||| ||||||| | ||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
1717571 |
aggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaat |
1717472 |
T |
|
| Q |
298 |
acttatgtgatgatgtc |
314 |
Q |
| |
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||||||||||| ||||| |
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| T |
1717471 |
acttatgtgatcatgtc |
1717455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 1754283 - 1754123
Alignment:
| Q |
154 |
tgaattgaacttgtttacagatatggtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
253 |
Q |
| |
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||||||||| |||| |||| |||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
1754283 |
tgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatctagatagcctcaagaaat |
1754184 |
T |
|
| Q |
254 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
314 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| |||||| |||||||||| ||||| |
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|
| T |
1754183 |
attacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc |
1754123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 154 - 314
Target Start/End: Complemental strand, 1748967 - 1748807
Alignment:
| Q |
154 |
tgaattgaacttgtttacagatatggtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
253 |
Q |
| |
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||||||||| |||| |||| |||||||||| | |||||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| | |
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| T |
1748967 |
tgaattgaatttgtggacaggtatggtaataaaccaagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagt |
1748868 |
T |
|
| Q |
254 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc |
314 |
Q |
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||||||||||||||||||||| |||||| ||||||| |||| | |||||||||| ||||| |
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| T |
1748867 |
attacaaggcagcttatgatgctgtgagaaaatacaacccagaggcttatgtgatcatgtc |
1748807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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