View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_24 (Length: 266)
Name: NF13588_low_24
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_24 |
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| [»] chr1 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 44816991 - 44817246
Alignment:
| Q |
11 |
cacagacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctca |
110 |
Q |
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| T |
44816991 |
cacaaacaactacaaatttgtaaacatagcttttctatccacttttggcaatggccaaaatccaactctaaaccttgcaggccattgtgatccagcctca |
44817090 |
T |
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| Q |
111 |
aacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctct |
210 |
Q |
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| T |
44817091 |
aacggctgcacaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctct |
44817190 |
T |
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| Q |
211 |
actcgtcttacgacgcctcacagcttgcaaactacctatggaacaatttcttgggt |
266 |
Q |
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| T |
44817191 |
actcgtcttacgacgcctcacagcttgcaaactacctatggaacaatttcttgggt |
44817246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 44834348 - 44834603
Alignment:
| Q |
11 |
cacagacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctca |
110 |
Q |
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| T |
44834348 |
cacaaacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactccaactctaaaccttgctggccattgtgatccagcctca |
44834447 |
T |
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| Q |
111 |
aacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctct |
210 |
Q |
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| T |
44834448 |
aacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaaagtgttgctatctctcggaggtggtgccggaagctactctcttt |
44834547 |
T |
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| Q |
211 |
actcgtcttacgacgcctcacagcttgcaaactacctatggaacaatttcttgggt |
266 |
Q |
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| T |
44834548 |
cctcagctgatgatgccacgcaggttgcaaattacctatggaacaatttcttgggt |
44834603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 149 - 266
Target Start/End: Complemental strand, 17571175 - 17571058
Alignment:
| Q |
149 |
tcaaagcaaaggcatcaaagtgttgctctctatcggaggtggcactggaagctactctctctactcgtcttacgacgcctcacagcttgcaaactaccta |
248 |
Q |
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| T |
17571175 |
tcaaagcaaaggcatcaaagtgttgctctttatcgaaggcggcgttggaagctactctctcaactcgtcttacgacaccacgcagcttgcaaactaccta |
17571076 |
T |
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| Q |
249 |
tggaacaatttcttgggt |
266 |
Q |
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| T |
17571075 |
tggaacaatttcttgggt |
17571058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 23396704 - 23396549
Alignment:
| Q |
9 |
agcacagacaactaccaatttgtaaacatagcttttctatccacttttggcaatggccaaactc-caactctaaaccttgctggccattgtgatccagcc |
107 |
Q |
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| T |
23396704 |
agcacaaacaactaccaatttataaacatagcttttctatccacttt-ggcaatggccaaaatcacaact--aaaccttgcaggccattgtgatccatcc |
23396608 |
T |
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| Q |
108 |
tcaaacggttgcacaaagtttagtagtgaaattcaaacttgtcaaagcaaaggcatcaa |
166 |
Q |
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| T |
23396607 |
acaaatggctgcagaaactttagtaaagatatccaaacttgtcaaagcaaaggcatcaa |
23396549 |
T |
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