View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_26 (Length: 248)
Name: NF13588_low_26
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4124004 - 4124246
Alignment:
| Q |
1 |
ctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatt |
100 |
Q |
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| T |
4124004 |
ctgcatctgcagggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatt |
4124103 |
T |
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| Q |
101 |
tgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgagacaattccatttgaa |
200 |
Q |
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| T |
4124104 |
tgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatttttgtgaattgtgactattccatttgaa |
4124203 |
T |
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| Q |
201 |
tctttgagtggttgatctctgtttgcaatccatatattcttgg |
243 |
Q |
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| T |
4124204 |
tctttgagtggttgatctctgtttgcaatccatatattgttgg |
4124246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 4153354 - 4153596
Alignment:
| Q |
1 |
ctgcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4153354 |
ctgcatctgcagggtgtgtgaaactatcccagattgttgctccggaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatt |
4153453 |
T |
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| Q |
101 |
tgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgagacaattccatttgaa |
200 |
Q |
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| T |
4153454 |
tgttgaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattataaaatttccatctttgtgaattgtgacaattccatttgaa |
4153553 |
T |
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| Q |
201 |
tctttgagtggttgatctctgtttgcaatccatatattcttgg |
243 |
Q |
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| T |
4153554 |
tctttgagtggttgatctctgtttgcaatccatatattgttgg |
4153596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 5 - 235
Target Start/End: Original strand, 4134553 - 4134783
Alignment:
| Q |
5 |
atctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgtt |
104 |
Q |
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| T |
4134553 |
atctgcagggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgtt |
4134652 |
T |
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| Q |
105 |
gaagatgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgagacaattccatttgaatctt |
204 |
Q |
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| T |
4134653 |
gaagatgaaatgtttgttgaccaaatgatgataccatttggtttgttcaatattacaagatttccatctttgtgaattgtgacaattccatttgaatctt |
4134752 |
T |
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| Q |
205 |
tgagtggttgatctctgtttgcaatccatat |
235 |
Q |
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| T |
4134753 |
tgagtggttgatctctgtttgcaatccatat |
4134783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 12 - 235
Target Start/End: Original strand, 4145362 - 4145585
Alignment:
| Q |
12 |
gggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttgttgaagatg |
111 |
Q |
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|||||||||||||||||||||||||||||||||||| |||| ||||| | ||||||||| |||| |||| |||||| ||||||||||||||||||||||| |
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| T |
4145362 |
gggtgtgtgaaactatcccagattgttgctccagaattgatgtctcttagaatcaagttccctgcatcatcaagtttagctgttgaatttgttgaagatg |
4145461 |
T |
|
| Q |
112 |
aaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgagacaattccatttgaatctttgagtgg |
211 |
Q |
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| T |
4145462 |
aaatgtttgttgaccaaatgatgctgccatttggtttgttcaaaattacaagatttccatttttgtgaattgtgacaattccatttgaatctttgagtgg |
4145561 |
T |
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| Q |
212 |
ttgatctctgtttgcaatccatat |
235 |
Q |
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|||||||||||||||||||||||| |
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| T |
4145562 |
ttgatctctgtttgcaatccatat |
4145585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 4163709 - 4163955
Alignment:
| Q |
3 |
gcatctgctgggtgtgtgaaactatcccagattgttgctccagaactgatatctctcaaaatcaagtttcctgaatcagcaagttgagctgttgaatttg |
102 |
Q |
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||||| || ||||| |||||||||||||| ||||||| || |||| |||| || || | ||||||||||||| |||| ||||||||||||| |||||| |
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| T |
4163709 |
gcatccgcagggtgagtgaaactatcccaaattgttgatctagaattgatgtcacttagaatcaagtttcctacatcaacaagttgagctgtggaattta |
4163808 |
T |
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| Q |
103 |
ttgaa----ga--tgaaatgtttgttgaccatataataacaccatttggtttgttcaatattacaagatttccatctttgtgaattgagacaattccatt |
196 |
Q |
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||||| || ||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||| |
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| T |
4163809 |
ttgaatttggacttgaaatgcttgttgaccaaatgatgctaccattttctttgttcaatattacaagatttccatttttgtgaattgtgactattccatt |
4163908 |
T |
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| Q |
197 |
tgaatctttgagtggttgatctctgtttgcaatccatatattcttgg |
243 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
4163909 |
tgaatccttgagtggttgatctctgtttgcaatccatatattgttgg |
4163955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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