View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13588_low_3 (Length: 705)
Name: NF13588_low_3
Description: NF13588
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13588_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 5463615 - 5463969
Alignment:
| Q |
21 |
cccgtttagttgtggatgctatttgtgcttcaatgctagagggttatgagaagaacaaggttttaagggcggcaaaacaacagttggaggctgcggctac |
120 |
Q |
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| T |
5463615 |
cccgtttagatgtggatgctatttgtgcttcaatgctagagggttatgagaagaacaaggttttatgggcggcaaaacaacagttggaggctgcggctac |
5463714 |
T |
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| Q |
121 |
tcatatgggaccatcaagtcggaagaaga------ccaccaagaggaagatgaagaaaaacaagagaagcaagttgaagataccatttaacttttaatta |
214 |
Q |
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| T |
5463715 |
tcatatgggaccatcaagtcggaagaagaatgagaccaccaagaggaagatgaagaaaaacaagagaagcaagatgaagataccatttaacttttaatta |
5463814 |
T |
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| Q |
215 |
taggttggaatcatgtgtgttagttagttagtggcttcttatgttatatattatgtttttggttacagatttacat--tctggatgattgga--tataat |
310 |
Q |
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| T |
5463815 |
taggttggaatcatgtgtgttagttagttagtggcttcttatgttatatattatgtttttggttacagaattacattctctctatca-tggatgtataat |
5463913 |
T |
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| Q |
311 |
aatcactctactttctgcatgtttcttattcttaattttttatctaatataaactact |
368 |
Q |
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| T |
5463914 |
aatcactctactttctgcatgtttcttattcttaa--ttttatctaatataaactact |
5463969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 469 - 594
Target Start/End: Original strand, 5454966 - 5455092
Alignment:
| Q |
469 |
ggaaaaggtcaagtgtggttaaaaggacagaatttgggacgctactgtcctgcttataatgcatctactatttgtgattattgcaattatgca-gaactt |
567 |
Q |
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| T |
5454966 |
ggaaaaggtcaaatgtggttaaatggacagaatttgggacgctactggcctgcttataaagcatctggttcttgtgattattgcaattatgcaggaacct |
5455065 |
T |
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| Q |
568 |
acaatgataaaaaatgtggaaccaact |
594 |
Q |
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| T |
5455066 |
ataatgagaaaaagtgtggatccaact |
5455092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 625 - 687
Target Start/End: Original strand, 5455286 - 5455345
Alignment:
| Q |
625 |
ggtgtgtctttggttagaaggagggatatagatagtgtttgtgctgatatttatgagtggcag |
687 |
Q |
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| T |
5455286 |
ggtgtgtctttggttagaagg---gatatagatagtgtttgtgctgatatttatgagtggcag |
5455345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 243
Target Start/End: Complemental strand, 4524698 - 4524659
Alignment:
| Q |
204 |
acttttaattataggttggaatcatgtgtgttagttagtt |
243 |
Q |
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| T |
4524698 |
actttcaattataggttggaatcatgtgtgttagtgagtt |
4524659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 646 - 687
Target Start/End: Complemental strand, 42986465 - 42986424
Alignment:
| Q |
646 |
agggatatagatagtgtttgtgctgatatttatgagtggcag |
687 |
Q |
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| T |
42986465 |
agggatatagatagtgtatgtgcagatatttatgagtggcag |
42986424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 527
Target Start/End: Complemental strand, 42986806 - 42986742
Alignment:
| Q |
463 |
agtattggaaaaggtcaagtgtggttaaaaggacagaatttgggacgctactgtcctgcttataa |
527 |
Q |
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| T |
42986806 |
agtatgggaaaaggacaagtgtggttaaatggacagaatcttggccgttactggcctgcttataa |
42986742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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